======================================================================

Originator: Chris Fischer 
Date: 6-10-2017
Tag: cime5.3.0-alpha.26
Answer Changes: None
Tests:  scripts_regression_tests.py J_TestCreateNewcase
        scripts_regression_tests
Dependencies:

Brief Summary:
    - Provides better description of CCSM_BGC xml variable for both ACME and
      CESM
    - Add a test to scripts_regression_tests.py to assure that instantiating a
      case does not invoke a flush command.
    - User compset fixes.

User interface changes: 

PR summary: git log --oneline --first-parent [previous_tag]..master 
f8eb8b4 Merge pull request #1670 from ESMCI/mvertens/fix_ccsm_bgc_desc
8ea2801 Merge pull request #1666 from jedwards4b/case_instantiate_test
383c1f5 Merge pull request #1667 from billsacks/user_compset_fixes


Modified files: git diff --name-status [previous_tag]
M       scripts/create_newcase
M       scripts/lib/CIME/case.py
M       scripts/tests/scripts_regression_tests.py
M       src/drivers/mct/cime_config/config_component_acme.xml
M       src/drivers/mct/cime_config/config_component_cesm.xml
M       src/drivers/mct/cime_config/namelist_definition_drv.xml

======================================================================

======================================================================

Originator: Chris Fischer	 
Date: 6-8-2017
Tag: cime5.3.0-alpha.25
Answer Changes: None
Tests:  scripts_regression_tests.py, SMS_D.f19_f19.F1850.cori-knl_intel 
        create_test cime_developer 
Dependencies:

Brief Summary:
    - Remove COMP_INTERFACE references to esmf and downcase the value.
    - Make Flgl_qice attname consistent with name.

User interface changes: 

PR summary: git log --oneline --first-parent [previous_tag]..master 
aadee35 Merge pull request #1663 from jedwards4b/comp_interface_fix
f8f6221 Merge pull request #1662 from billsacks/fix_flgl


Modified files: git diff --name-status [previous_tag]
M       config/acme/machines/Makefile
M       config/cesm/machines/Makefile
M       scripts/lib/CIME/build.py
M       scripts/lib/CIME/test_scheduler.py
M       src/drivers/mct/cime_config/config_component.xml
M       src/drivers/mct/shr/seq_flds_mod.F90


======================================================================

======================================================================

Originator: Chris Fischer 
Date: 6-8-2017
Tag: cime5.3.0-alpha.24
Answer Changes: None
Tests: scripts_regression_tests.py
Dependencies:

Brief Summary:
    - Convert user_mods_dir to abspath earlier.
    - Update gnu modules on cheyenne to use openmpi.
    - Fix failing builds on CIME master.
    - Update cime users guide.
    - Cleanup and fixes addressing running scripts_regression_tests.py on a mac.
    - Update contents after create_case.
    - Define out-of-the-box.
    - Update case-basics
    - Replace manage_case with query_case.
    - Updates modules for cori-knl in cesm.
    - Update cime users guide.
    - Add a grid alias and new test to mct driver testlist.
    - Merge of bjsmith changes to cime users guide.
    - New match attribute that can be 'last' or 'first' for values match in
      component.py

User interface changes: 
    - New match attribute elements that are children of <entry> nodes.

PR summary: git log --oneline --first-parent [previous_tag]..master 
72198f2 Merge pull request #1657 from billsacks/usermods_relative_path
9ae4f31 Merge pull request #1661 from ESMCI/fischer/gnu_cheyenne
9a43e4b hot fix for issue 1656
75c1967 Merge pull request #1652 from bjsmith2014/master
86912da Merge pull request #1645 from jedwards4b/macport_issues
8517405 Update contents after create_case
435b426 Define out-of-the-box
cb41c58 Update case-basics
6e72a7b replace manage_case with query_case
19a4641 Merge pull request #1649 from jedwards4b/cori_update
543629e Merge pull request #1648 from bjsmith2014/master
0ab580e Merge pull request #1646 from ESMCI/fischer/TestGridUpdate
c26ec40 Merge pull request #1641 from bjsmith2014/master
0d1bbd8 Merge pull request #1636 from ESMCI/mvertens/new_component_matches
3b238a8 Merge pull request #1635 from bjsmith2014/master

Modified files: git diff --name-status [previous_tag]
M       config/acme/machines/Makefile
M       config/cesm/config_grids.xml
M       config/cesm/machines/Makefile
M       config/cesm/machines/config_machines.xml
M       config/xml_schemas/config_compsets.xsd
M       doc/source/users_guide/building-a-case.rst
M       doc/source/users_guide/case-basics.rst
M       doc/source/users_guide/cime-internals.rst
M       doc/source/users_guide/cloning-a-case.rst
M       doc/source/users_guide/create-a-case.rst
M       doc/source/users_guide/customizing-a-case.rst
M       doc/source/users_guide/introduction-and-overview.rst
M       doc/source/users_guide/optimizing-processor-layout.rst
M       doc/source/users_guide/porting-cime.rst
M       doc/source/users_guide/running-a-case.rst
M       doc/source/users_guide/setting-up-a-case.rst
M       doc/source/users_guide/troubleshooting.rst
M       scripts/create_newcase
M       scripts/lib/CIME/SystemTests/system_tests_common.py
M       scripts/lib/CIME/XML/component.py
M       scripts/lib/CIME/XML/entry_id.py
M       scripts/lib/CIME/XML/machines.py
M       src/build_scripts/buildlib.csm_share
M       src/components/data_comps/datm/cime_config/config_component.xml
M       src/components/data_comps/desp/cime_config/config_component.xml
M       src/components/data_comps/dice/cime_config/config_component.xml
M       src/components/data_comps/dlnd/cime_config/config_component.xml
M       src/components/data_comps/docn/cime_config/config_component.xml
M       src/components/data_comps/drof/cime_config/config_component.xml
M       src/components/data_comps/dwav/cime_config/config_component.xml
M       src/drivers/mct/cime_config/config_component.xml
M       src/drivers/mct/cime_config/config_component_acme.xml
M       src/drivers/mct/cime_config/config_component_cesm.xml
M       src/drivers/mct/cime_config/testdefs/testlist_drv.xml


======================================================================

======================================================================

Originator: Chris Fischer	 
Date: 6-4-2017
Tag: cime5.3.0-alpha.23
Answer Changes: None
Tests: scripts_regression_tests
       pylint, unit-tests
Dependencies:

Brief Summary:
    - Fixes a critical error for ERP tests.
    - Change run_cmd_no_fail doctest to not match directory.
    - Bring bless_test_results behavior into an exact match with create_test -g.
    - Merge and update CIME users guide rst source.
    - Fix a critical problem in code_checker that caused it to filter too many files.
    - Copied doc dir into master in order to create a gh-pages orphan branch.
    - Fix race condition with case XML files when using set_file and some other unrelated bugs.

User interface changes: 

PR summary: git log --oneline --first-parent [previous_tag]..master 
4525e19 Merge pull request #1639 from ESMCI/mvertens/python3string_fixes
4775d9a Change run_cmd_no_fail doctest to not match directory
4db9834 Merge pull request #1632 from ESMCI/jgfouca/generate_baseline_should_include_logs
4ba0b44 Merge pull request #1631 from bjsmith2014/master
37e4ed7 Merge pull request #1629 from ESMCI/jgfouca/pylint_fixes_and_more
6a7ffc2 Merge pull request #1623 from bertinia/master
65bd395 Merge pull request #1616 from ESMCI/jgfouca/fix_race


Modified files: git diff --name-status [previous_tag]
M	.gitignore
A	.nojekyll
M	LICENSE.TXT
A	doc/Makefile
A	doc/source/_static
A	doc/source/build_cpl/index.rst
A	doc/source/build_cpl/introduction.rst
A	doc/source/conf.py
A	doc/source/conf.py_old
A	doc/source/data_models/data-atm.rst
A	doc/source/data_models/data-lnd.rst
A	doc/source/data_models/data-model-science.rst
A	doc/source/data_models/data-ocean.rst
A	doc/source/data_models/data-river.rst
A	doc/source/data_models/data-seaice.rst
A	doc/source/data_models/data-wave.rst
A	doc/source/data_models/design-details.rst
A	doc/source/data_models/index.rst
A	doc/source/data_models/input-streams.rst
A	doc/source/data_models/introduction.rst
A	doc/source/driver_cpl/bit-for-bit-flag.rst
A	doc/source/driver_cpl/budgets.rst
A	doc/source/driver_cpl/cplug-02.1-figx1.jpg
A	doc/source/driver_cpl/design.rst
A	doc/source/driver_cpl/driver_threading_control.rst
A	doc/source/driver_cpl/grids.rst
A	doc/source/driver_cpl/history-and-restarts.rst
A	doc/source/driver_cpl/implementation.rst
A	doc/source/driver_cpl/index.rst
A	doc/source/driver_cpl/initialization-and-restart.rst
A	doc/source/driver_cpl/introduction.rst
A	doc/source/driver_cpl/multi-instance.rst
A	doc/source/driver_cpl/namelist-overview.rst
A	doc/source/driver_cpl/time-management.rst
A	doc/source/index.rst
A	doc/source/misc_tools/index.rst
A	doc/source/users_guide/adding-cases.rst
A	doc/source/users_guide/building-a-case.rst
A	doc/source/users_guide/case-basics.rst
A	doc/source/users_guide/cime-internals.rst
A	doc/source/users_guide/cloning-a-case.rst
A	doc/source/users_guide/create-a-case.rst
A	doc/source/users_guide/customizing-a-case.rst
A	doc/source/users_guide/faq/basics-a-basic-example.rst
A	doc/source/users_guide/faq/basics-mpi-example.rst
A	doc/source/users_guide/faq/basics-setting-up-a-branch-or-hybrid-run.rst
A	doc/source/users_guide/faq/faq.rst
A	doc/source/users_guide/index.rst
A	doc/source/users_guide/introduction-and-overview.rst
A	doc/source/users_guide/multi-instance.rst
A	doc/source/users_guide/optimizing-processor-layout.rst
A	doc/source/users_guide/porting-cime.rst
A	doc/source/users_guide/running-a-case.rst
A	doc/source/users_guide/setting-up-a-case.rst
A	doc/source/users_guide/testing.rst
A	doc/source/users_guide/troubleshooting.rst
A	doc/source/users_guide/unit_testing.rst
A	doc/source/what_cime/index.rst
A	index.html
M	scripts/Tools/normalize_cases
M	scripts/lib/CIME/SystemTests/erp.py
M	scripts/lib/CIME/SystemTests/homme.py
M	scripts/lib/CIME/SystemTests/ncr.py
M	scripts/lib/CIME/SystemTests/system_tests_common.py
M	scripts/lib/CIME/XML/machines.py
M	scripts/lib/CIME/build.py
M	scripts/lib/CIME/case.py
M	scripts/lib/CIME/code_checker.py
M	scripts/lib/CIME/hist_utils.py
M	scripts/lib/CIME/utils.py
M	scripts/lib/CIME/wait_for_tests.py
M	scripts/tests/scripts_regression_tests.py

======================================================================

======================================================================

Originator: Chris Fischer
Date: 5-28-2017
Tag: cime5.3.0-alpha.22
Answer Changes: Climate Changing for active two-way coupled GLC
Tests: Ran gnu TG smoke tests
       aux_clm45 yellowstone_gnu
       create_test cime_developer --queue long
       scripts_regression_tests.py --fast
       code_checker and scripts_regressions_tests.pr
       CECO.hobart_pgi build
        
Dependencies:

Brief Summary:
    - Remove no-longer-needed CISM_GNU setting.
    - Add more error-checking with gnu in debug mode.
    - Map SMB from lnd to glc using bilinear mapping with a conservation
      correction.
    - Do not eval words - only strings with whitespace.
    - Change all python2 style strings to python3 style strings.
    - Update the user_defined template.
    - Update testreporter and change hobart queue to medium.
    - Improve handling of hist comparisons in TestStatus.log.
    - Update PGI compiler to 17.04 on hobart.
    - Downscale build parellism on small machines.

User interface changes: 
    - New drv_in namelist variable: 'glc_renormalize_smb'
    - Contents of TestStatus.log.
    - Automatic downscale of builds.

PR summary: git log --oneline --first-parent [previous_tag]..master 
2f6e683 Merge pull request #1620 from billsacks/remove_cism_gnu
4f08bb0 Merge pull request #1618 from billsacks/gnu_debug_flags
7a5242d Merge pull request #1609 from billsacks/lnd2glc_bilinear
21f2a20 Merge pull request #1614 from jedwards4b/eval_fix
2890518 Merge pull request #1608 from ESMCI/erichlf/3strings
fb3f533 Merge pull request #1611 from jedwards4b/update_user_defined
162ba85 Merge pull request #1610 from ESMCI/fischer/testreporter_fix
a9cc09c Merge pull request #1606 from ESMCI/jgfouca/improve_logs_for_compares
2deb949 Merge pull request #1602 from mnlevy1981/machines/hobart_pgi_ver
0b55ea3 Merge pull request #1605 from ESMCI/jgfouca/downscale_builds_on_small_machs


Modified files: git diff --name-status [previous_tag]
M	config/acme/machines/template.st_archive
M	config/cesm/machines/Makefile
M	config/cesm/machines/config_batch.xml
M	config/cesm/machines/config_compilers.xml
M	config/cesm/machines/config_machines.xml
M	config/cesm/machines/template.st_archive
M	config/cesm/machines/userdefined_laptop_template/README.md
M	config/cesm/machines/userdefined_laptop_template/config_compilers.xml
M	config/cesm/machines/userdefined_laptop_template/config_machines.xml
M	scripts/Tools/acme_check_env
M	scripts/Tools/bless_test_results
M	scripts/Tools/case.build
M	scripts/Tools/case.cmpgen_namelists
M	scripts/Tools/case.setup
M	scripts/Tools/case_diff
M	scripts/Tools/check_case
M	scripts/Tools/check_input_data
M	scripts/Tools/check_lockedfiles
M	scripts/Tools/cime_bisect
M	scripts/Tools/code_checker
M	scripts/Tools/compare_namelists
M	scripts/Tools/compare_test_results
M	scripts/Tools/component_compare_baseline
M	scripts/Tools/component_compare_copy
M	scripts/Tools/component_compare_test
M	scripts/Tools/component_generate_baseline
M	scripts/Tools/cs.status
M	scripts/Tools/jenkins_generic_job
M	scripts/Tools/list_acme_tests
M	scripts/Tools/normalize_cases
M	scripts/Tools/pelayout
M	scripts/Tools/pointclm/makepointdata.py
M	scripts/Tools/pointclm/post_process.py
M	scripts/Tools/pointclm/site_fullrun.py
M	scripts/Tools/preview_run
M	scripts/Tools/save_provenance
M	scripts/Tools/simple_compare
M	scripts/Tools/testreporter.py
M	scripts/Tools/update_acme_tests
M	scripts/Tools/xmlconvertors/config_pes_converter.py
M	scripts/Tools/xmlconvertors/grid_xml_converter.py
M	scripts/create_newcase
M	scripts/fortran_unit_testing/python/printer.py
M	scripts/fortran_unit_testing/run_tests.py
M	scripts/lib/CIME/BuildTools/configure.py
M	scripts/lib/CIME/BuildTools/macrowriterbase.py
M	scripts/lib/CIME/SystemTests/dae.py
M	scripts/lib/CIME/SystemTests/eri.py
M	scripts/lib/CIME/SystemTests/erio.py
M	scripts/lib/CIME/SystemTests/erp.py
M	scripts/lib/CIME/SystemTests/err.py
M	scripts/lib/CIME/SystemTests/ers.py
M	scripts/lib/CIME/SystemTests/ers2.py
M	scripts/lib/CIME/SystemTests/homme.py
M	scripts/lib/CIME/SystemTests/nck.py
M	scripts/lib/CIME/SystemTests/ncr.py
M	scripts/lib/CIME/SystemTests/nodefail.py
M	scripts/lib/CIME/SystemTests/pea.py
M	scripts/lib/CIME/SystemTests/pem.py
M	scripts/lib/CIME/SystemTests/pet.py
M	scripts/lib/CIME/SystemTests/pre.py
M	scripts/lib/CIME/SystemTests/seq.py
M	scripts/lib/CIME/SystemTests/ssp.py
M	scripts/lib/CIME/SystemTests/system_tests_common.py
M	scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M	scripts/lib/CIME/XML/archive.py
M	scripts/lib/CIME/XML/batch.py
M	scripts/lib/CIME/XML/compilerblock.py
M	scripts/lib/CIME/XML/compilers.py
M	scripts/lib/CIME/XML/component.py
M	scripts/lib/CIME/XML/compsets.py
M	scripts/lib/CIME/XML/entry_id.py
M	scripts/lib/CIME/XML/env_archive.py
M	scripts/lib/CIME/XML/env_base.py
M	scripts/lib/CIME/XML/env_batch.py
M	scripts/lib/CIME/XML/env_mach_pes.py
M	scripts/lib/CIME/XML/env_mach_specific.py
M	scripts/lib/CIME/XML/env_test.py
M	scripts/lib/CIME/XML/files.py
M	scripts/lib/CIME/XML/generic_xml.py
M	scripts/lib/CIME/XML/grids.py
M	scripts/lib/CIME/XML/machines.py
M	scripts/lib/CIME/XML/namelist_definition.py
M	scripts/lib/CIME/XML/pes.py
M	scripts/lib/CIME/XML/test_reporter.py
M	scripts/lib/CIME/XML/testlist.py
M	scripts/lib/CIME/XML/tests.py
M	scripts/lib/CIME/XML/testspec.py
M	scripts/lib/CIME/aprun.py
M	scripts/lib/CIME/bless_test_results.py
M	scripts/lib/CIME/build.py
M	scripts/lib/CIME/buildlib.py
M	scripts/lib/CIME/buildnml.py
M	scripts/lib/CIME/case.py
M	scripts/lib/CIME/case_cmpgen_namelists.py
M	scripts/lib/CIME/case_setup.py
M	scripts/lib/CIME/case_st_archive.py
M	scripts/lib/CIME/case_test.py
M	scripts/lib/CIME/check_input_data.py
M	scripts/lib/CIME/check_lockedfiles.py
M	scripts/lib/CIME/compare_namelists.py
M	scripts/lib/CIME/compare_test_results.py
M	scripts/lib/CIME/get_timing.py
M	scripts/lib/CIME/hist_utils.py
M	scripts/lib/CIME/namelist.py
M	scripts/lib/CIME/nmlgen.py
M	scripts/lib/CIME/preview_namelists.py
M	scripts/lib/CIME/provenance.py
M	scripts/lib/CIME/simple_compare.py
M	scripts/lib/CIME/test_scheduler.py
M	scripts/lib/CIME/test_status.py
M	scripts/lib/CIME/test_utils.py
M	scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M	scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two_link_to_case2_output.py
M	scripts/lib/CIME/tests/test_user_mod_support.py
M	scripts/lib/CIME/user_mod_support.py
M	scripts/lib/CIME/utils.py
M	scripts/lib/CIME/wait_for_tests.py
M	scripts/lib/jenkins_generic_job.py
M	scripts/lib/update_acme_tests.py
M	scripts/tests/list_tests
M	scripts/tests/scripts_regression_tests.py
M	src/drivers/mct/cime_config/namelist_definition_drv.xml
M	src/drivers/mct/main/CMakeLists.txt
M	src/drivers/mct/main/map_lnd2glc_mod.F90
M	src/drivers/mct/main/prep_glc_mod.F90
M	src/drivers/mct/main/prep_lnd_mod.F90
D	src/drivers/mct/main/vertical_gradient_calculator_2nd_order.F90
D	src/drivers/mct/main/vertical_gradient_calculator_base.F90
D	src/drivers/mct/main/vertical_gradient_calculator_factory.F90
M	src/drivers/mct/shr/glc_elevclass_mod.F90
M	src/drivers/mct/shr/seq_infodata_mod.F90
M	src/drivers/mct/unit_test/CMakeLists.txt
M	src/drivers/mct/unit_test/glc_elevclass_test/test_glc_elevclass.pf
D	src/drivers/mct/unit_test/map_lnd2glc_test/CMakeLists.txt
D	src/drivers/mct/unit_test/map_lnd2glc_test/test_map_lnd2glc.pf
M	src/drivers/mct/unit_test/stubs/CMakeLists.txt
D	src/drivers/mct/unit_test/stubs/vertical_gradient_calculator_constant.F90
D	src/drivers/mct/unit_test/vertical_gradient_calculator_test/CMakeLists.txt
D	src/drivers/mct/unit_test/vertical_gradient_calculator_test/README
D	src/drivers/mct/unit_test/vertical_gradient_calculator_test/gradient_example.txt
D	src/drivers/mct/unit_test/vertical_gradient_calculator_test/plot_gradient
D	src/drivers/mct/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_2nd_order.pf
D	src/drivers/mct/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_factory.pf
M	src/share/test/unit/shr_string_test/test_shr_string.pf
M	src/share/util/shr_string_mod.F90
M	tools/load_balancing_tool/code/merge.py
M	tools/load_balancing_tool/code/neos.py
M	tools/statistical_ensemble_test/pyCECT/pyCECT.py
M	tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M	tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M	tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
M	tools/utils/find_circular_dependency.py

======================================================================

======================================================================
Originator: Chris Fischer 
Date: 5-24-2017
Tag: cime5.3.0-alpha.21
Answer Changes: None
Tests: scripts_regression_tests.py 
Dependencies:

Brief Summary:
    - Fixed issue with GET_REFCASE not being set correctly.
    - Don't ignore attributes for Compilers.get_value.
    - Add ability for create_test to infer non-default machine from tests.

User interface changes: 

PR summary: git log --oneline --first-parent [previous_tag]..master 
25a7f27 Merge pull request #1604 from jedwards4b/refcase_fix
56fd28c Merge pull request #1598 from ESMCI/jgfouca/compiler_use_attribute
7003fe2 Merge pull request #1597 from ESMCI/jgfouca/infer_machine_from_tests

Modified files: git diff --name-status [previous_tag]
M       scripts/create_test
M       scripts/lib/CIME/XML/compilers.py
M       scripts/lib/CIME/case.py
M       scripts/lib/update_acme_tests.py
M       scripts/tests/scripts_regression_tests.py


======================================================================
Originator: Chris Fischer
Date: 5-24-2017
Tag: cime5.3.0-alpha.20
Answer Changes: None
Tests: 
Dependencies:

Brief Summary:
    - Add the f19_g17 maps, as wall as the ww3 <-> tx1v1 maps.

User interface changes: 

PR summary: git log --oneline --first-parent [previous_tag]..master 
0e9a1e0 Merge pull request #1594 from mnlevy1981/maps/update_ocean_maps

Modified files: git diff --name-status [previous_tag]
M       config/cesm/config_grids.xml

======================================================================
Originator: Chris Fischer 
Date: 5-24-2017 
Tag: cime5.3.0-alpha.19
Answer Changes: None
Tests: scripts_regression_tests --fast 
Dependencies:

Brief Summary:
    - Revert "Updated grid aliases in cesm/config_grids.xml"
    - Build failures should not dump a full stacktracesince a code problem is
      not the fault of CIME infrastructure.
      Also, deprecate shell calls to date in favor of python interface to get
      timestamp.

User interface changes: 

PR summary: git log --oneline --first-parent [previous_tag]..master 
0817502 Merge pull request #1596 from ESMCI/revert-1585-master
0ee6cb7 Merge pull request #1595 from ESMCI/jgfouca/improve_build_fail_msg


Modified files: git diff --name-status [previous_tag]
M       config/cesm/config_grids.xml
M       scripts/lib/CIME/SystemTests/system_tests_common.py
M       scripts/lib/CIME/build.py
M       src/drivers/mct/cime_config/buildnml


======================================================================
Originator: Chris Fischer 
Date: 5-23-2017
Tag: cime5.3.0-alpha.18
Answer Changes: None
Tests: scripts_regression_tests.py, hand test xmlquery
       ERS.f19_g16.X.yellowstone_intel 
       1850_DATM%CPLHIST_SLND_CICE_POP2%ECO_DROF%CPLHIST_SGLC_WW3
       SMS_D_Mmpi-serial_Ld1.T42_T42.FSCM5A97.hobart_nag

Dependencies:

Brief Summary:
    - Updated grid aliases in cesm/config_grids.xml.
    - Fix logic in st_archive wrt DOUT_S_SAVE_INTERIM_RESTART_FILES.
    - Improve comment for BASELINE status in TestStatus.
    - Fix an issue with xmlquery when the --file and --listall flags are used
      together.
    - Remove grid attribute from compset elements.
    - Update cime to support full X configuration.
    - Remove empty <Proxy> tag from anlworkstation.
    - DOCN aquaplanet from file and new A compsets with DOCN modes.
    - Use %CPLHIST for DATM coupler hist forcing.
    - Point to gx1v7 domain files that exist.
    - Merged recent changes from MCSclimate/mpi-serial into CIME.  
      Includes new hvector functions.

User interface changes: 
    - TestStatus changes

PR summary: git log --oneline --first-parent [previous_tag]..master 
e9a944c Merge pull request #1585 from alperaltuntas/master
568938d Merge pull request #1573 from jedwards4b/sta_fix
a4352db Merge pull request #1591 from ESMCI/jgfouca/improve_baseline_teststatus_comment
b4182ec Merge pull request #1593 from jedwards4b/xmlquery_and_config_compset
3189a86 Merge pull request #1592 from billsacks/compset_no_grid_attribute
7f6004f Merge pull request #1586 from apcraig/xcase
1ee8025 Merge pull request #1590 from ESMCI/sarich/anlworkstation-remove-proxy-tag
09c5136 Merge pull request #1582 from ESMCI/mvertens/docnmods
8657a18 Merge pull request #1578 from ESMCI/mvertens/datm_cplhist_mod
f109d77 Merge pull request #1567 from mnlevy1981/grids/fix_gx1v7_domain_datestamps
a8cc1a2 Merge pull request #1568 from gold2718/mpi-serial-import


Modified files: git diff --name-status [previous_tag]
M       config/acme/machines/config_machines.xml
M       config/cesm/config_grids.xml
M       config/cesm/machines/config_machines.xml
M       config/xml_schemas/config_compsets.xsd
M       scripts/Tools/xmlquery
M       scripts/lib/CIME/SystemTests/system_tests_common.py
M       scripts/lib/CIME/case_st_archive.py
M       src/components/data_comps/datm/cime_config/config_component.xml
M       src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M       src/components/data_comps/docn/cime_config/config_component.xml
M       src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M       src/components/data_comps/docn/docn_comp_mod.F90
M       src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M       src/components/xcpl_comps/xshare/dead_mct_mod.F90
M       src/drivers/mct/cime_config/config_component_cesm.xml
M       src/drivers/mct/cime_config/config_compsets.xml
A       src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/default/shell_commands
M       src/externals/mct/mpi-serial/Makefile
M       src/externals/mct/mpi-serial/README
M       src/externals/mct/mpi-serial/collective.c
A       src/externals/mct/mpi-serial/error.c
A       src/externals/mct/mpi-serial/ic_merge.c
M       src/externals/mct/mpi-serial/mpi.h
M       src/externals/mct/mpi-serial/mpif.h
M       src/externals/mct/mpi-serial/tests/ftest_old.F90
M       src/externals/mct/mpi-serial/type.c


======================================================================


Originator: Chris Fischer
Date: 5-18-2017 
Tag: cime5.3.0-alpha.17
Answer Changes: None
Tests: ERI.f09_g17.B1850.cheyenne_intel.allactive-defaultio
       scripts_regression_test.py
Dependencies:

Brief Summary:
    - Rearranges code for lookups a little in case.py.
    - Undo recent change to land domain.
    - Fix config pes converter.

User interface changes: 

PR summary: git log --oneline --first-parent [previous_tag]..master 
d33bc68 Merge pull request #1561 from jedwards4b/lookups_cleanup
3cc8bac Merge pull request #1560 from jedwards4b/undo_land_domain_change
c3458a8 Merge pull request #1557 from ESMCI/sarich/fix-config-pes-converter


Modified files: git diff --name-status [previous_tag]
M       config/cesm/config_grids.xml
M       scripts/Tools/xmlconvertors/config_pes_converter.py
M       scripts/Tools/xmlconvertors/grid_xml_converter.py
M       scripts/lib/CIME/case.py


======================================================================

======================================================================
Originator: Chris Fischer 
Date: 5-17-2017
Tag: cime5.3.0-alpha.16
Answer Changes: None
Tests: scripts_reggression_tests.py
Dependencies:

Brief Summary:
    - Fix bug which was preventing config_compsets from modifying xml
      variables.

User interface changes: 

PR summary: git log --oneline --first-parent [previous_tag]..master 
d4e9285 Merge pull request #1559 from jedwards4b/compset_var_settings

Modified files: git diff --name-status [previous_tag]
M       config/cesm/config_grids.xml
M       scripts/lib/CIME/case.py



======================================================================
Originator: Jim Edwards
Date: 5-17-2017
Tag: cime5.3.0-alpha.15
Answer Changes: None
Tests: scripts_regression_tests.py
d581e52 (HEAD, origin/master, origin/HEAD, master) Merge pull request #1554 from jedwards4b/eri_histfile_cleanup
906c88a Merge pull request #1556 from ESMCI/mvertens/fix_usermods
d404d35 Merge pull request #1551 from jedwards4b/multi_component_user_mods
7355f9d Merge pull request #1547 from ESMCI/mvertens/convert_stream_tabs
99c59b4 Merge pull request #1552 from jedwards4b/user_compset_message_change
7aebc3e Merge pull request #1553 from jedwards4b/memory_usage_correction
9e81110 Merge pull request #1548 from jedwards4b/improve_user_compset_error_checking
98d386f Merge pull request #1546 from jedwards4b/improve_user_compset_error_checking
980f15d Merge pull request #1542 from jedwards4b/fix_env_run_check_in_tests



======================================================================
Originator: Chris Fischer
Date: 5-15-2017
Tag: cime5.3.0-alpha.14
Answer Changes: None
Tests: scripts_regression_tests.py
       hand test 2000_CAM50_SLND_SICE_DOCN%AQP3_SROF_SGLC_SWAV
       ERR.f09_g16.B1850.cheyenne_intel.allactive-defaultio

Dependencies:

Brief Summary:
    - Update mct testlist from yellowstone to cheyenne.
    - Remove xrof_flood_mode from config_grids assure exactly two grids.
    - Add ability to remove tabs in shr_string_lalign.
    - Timing should use largest ncpl value not atm value.
    - Remove user_mods support from the config_compsets.xml file and adds it
      to the config_component.xml file.
    - Define the list of expected attributes to the mpirun command so that the
      all do not need to be passed in.
    - Avoid defining non-existant variable MASK_DOMAIN_FILE.
    - Make sure that case.set_value is setting a valid variable and error out
      if it is not.
    - Improve error message for incorrect grid alias.
    - Add a case.test --reset option to manually reset a test to initial
      conditions.
    - Improve error messages for modify_via_xml and cannot_modify_by_user_nl.
    - Only create rest directories if they are going to be populated.
    - Allow the user the option of skipping the xmllint validation of cime xml
      files.

User interface changes:
    - Add --reset option to case.test.

PR summary: git log --oneline --first-parent [previous_tag]..master
71b8edb Merge pull request #1537 from ESMCI/fischer/testlist_cheyenne
7494139 Merge pull request #1535 from jedwards4b/xrof_flood_mode_fixagain
5894c4d Merge pull request #1531 from ESMCI/mvertens/remove_stream_tabs
9f92bf0 Merge pull request #1524 from jedwards4b/correct_ncpl_in_timing
62fa492 Merge pull request #1523 from jedwards4b/user_mods_in_component
a5e9bc0 Merge pull request #1521 from jedwards4b/define_expected_attributes
cecbbd5 Merge pull request #1518 from jedwards4b/no_mask_domain
1bbbfc2 Merge pull request #1517 from jedwards4b/set_value_valid
3bcfbe4 Merge pull request #1515 from jedwards4b/grid_alais_message
94455fc Merge pull request #1502 from jedwards4b/reset_test_case
6ebd989 Merge pull request #1514 from billsacks/modify_via_xml_error_msg
9d865d5 Merge pull request #1511 from jedwards4b/no_interum_dirs
144cc38 Merge pull request #1509 from jedwards4b/allowed_schema_skip


Modified files: git diff --name-status [previous_tag]
M       config/acme/machines/template.case.test
M       config/cesm/config_grids.xml
M       config/cesm/machines/template.case.test
M       config/xml_schemas/config_compsets.xsd
M       config/xml_schemas/env_mach_specific.xsd
M       scripts/lib/CIME/SystemTests/system_tests_common.py
M       scripts/lib/CIME/XML/compsets.py
M       scripts/lib/CIME/XML/env_mach_specific.py
M       scripts/lib/CIME/XML/grids.py
M       scripts/lib/CIME/XML/namelist_definition.py
M       scripts/lib/CIME/XML/pes.py
M       scripts/lib/CIME/case.py
M       scripts/lib/CIME/case_st_archive.py
M       scripts/lib/CIME/case_submit.py
M       scripts/lib/CIME/case_test.py
M       scripts/lib/CIME/get_timing.py
M       src/build_scripts/buildlib.mct
M       src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M       src/share/test/unit/shr_string_test/test_shr_string.pf
M       src/share/util/shr_string_mod.F90


======================================================================

======================================================================

Originator: Chris Fischer
Date: 5-10-2017
Tag: cime5.3.0-alpha.13
Answer Changes:  Round Off
Tests: aux_glc test suite
Dependencies:

Brief Summary:
    - New CISM mapping files.
    - Fix pylint issues.

User interface changes:

PR summary: git log --oneline --first-parent [previous_tag]..master
67c14ca Merge pull request #1478 from billsacks/cism_new_mapping_files
affab50 fix pylint issue


Modified files: git diff --name-status [previous_tag]
M       config/cesm/config_grids.xml
M       scripts/lib/CIME/case.py

======================================================================

======================================================================

Originator: Chris Fischer
Date: 5-9-2017
Tag: cime5.3.0-alpha.12
Answer Changes: None
Tests: scripts_regression_tests.py
       hand test of xmlquery
       ERR.f09_g16.B1850
       code_checker
       create_test cime_developer
       SMS.ne30z60_ne30.F1850
       ERS2 test
       SMS_Mmpi-serial.f19_g17.X.hobart_intel
Dependencies:

Brief Summary:
    - Fixes building when certain path variables have a trailing /
    - xmlquery options --file and --listall were not working together, now
      they are.
    - Fix for SOM bug introduced in PR #1451
    - Add new grid aliases for gx3v7 and usgs masks.
    - Improve ERR by removing rundir files and recopying from sta rest
      directory.
    - Change allows the user to specify a file in either the config_pes.xml
      or the env_mach_pes.xml format.
    - Add skip-preview-namelist to case.submit and case_run.
    - Simplify settings in CCSM_CO2_PPMV in config_components_cesm.xml.
    - Fix force queue.
    - Fix pylint errors.
    - Fix bug where file drv_flds_in wasn't being closed after being opened.
    - Add missing term for NET WATER BUDGET tables.
    - Add some major NCAR contributors to cime.
    - Fixes for zlev problem.
    - Renamed manage_case to query_config.
    - Make alternative implementation for ERS.
    - Remove empty mpi-serial settings from config_machines.xml.
    - Only warning for single dash.
    - Additional fields needed for environment_variables.
    - Template files were not correctly upgraded to the new argument oarsing.
    - Fix ACME config_machines.xml format.
    - Add new runoff -> gx1v6 maps.
    - Removed old ncl utilities. Changed the random pertlim generator to allow
      more (and flexible) number of ensemble members. Added the capability to
      generate 9 time step ensembles for UF-CAM-ECT.

User interface changes:
    - xmlquery --file and --listall can now be used together.
    - --pesfile argument in create_newcase
    - Added --skip-preview-namelist to case.build and
      template.case.run
    - manage_case -> query_config
      --compset -> --compsets
      --machine -> --machines
      added 'all' option for --compsets
      added 'current' and to --machines
    - New ERS2 test type.
    - Print a warning to stdout if single dash used with multi-char arg.

PR summary: git log --oneline --first-parent [previous_tag]..master
56f5df26 Merge pull request #1495 from ESMCI/mfdeakin-sandia/fix_build_paths
e234bc6e Merge pull request #1504 from jedwards4b/xmlquery_again
10fbc430 Merge pull request #1501 from ESMCI/mvertens/somfix
3beac4ab Merge pull request #1500 from ESMCI/fischer/grid_mask
1ca58a07 Merge pull request #1499 from jedwards4b/err_test_improvement1
18112d92 Merge pull request #1494 from jedwards4b/pesfile_usage
cdcb096b Merge pull request #1471 from ESMCI/erichlf/case_submit/skip_pnl
5684406d Merge pull request #1487 from ESMCI/mvertens/fix_ccsm_co2_ppmv
99f1f5ba Merge pull request #1496 from ESMCI/jgfouca/fix_force_queue
93a452a9 Merge pull request #1490 from ESMCI/jgfouca/fix_pylint_errs
cf204753 Merge pull request #1491 from ESMCI/fischer/readnl_close
0847f8df Merge pull request #1427 from jtruesdal/water_budget
893a6135 Merge pull request #1458 from billsacks/ncar_credits
653dd297 Merge pull request #1469 from ESMCI/mvertens/fixzlev
68f4b5d7 Merge pull request #1388 from ESMCI/erichlf/manage_case
b661f5bd Merge branch 'jgfouca/alternative_impl_for_ers' (PR #1482)
ef7d0fe9 Merge pull request #1482 from ESMCI/jgfouca/alternative_impl_for_ers
7aadd49b Merge pull request #1454 from jedwards4b/mpi-serial-cleanup
4d4281f2 Merge pull request #1474 from jedwards4b/no_error_warning
34d00048 Minor hotfix for ACME config_machines.xml
71064281 Merge pull request #1477 from jedwards4b/env_vars_attributes
9c463bf9 Merge pull request #1476 from ESMCI/jgfouca/fix_acme_template_files
25ce0223 Merge pull request #1475 from
ESMCI/jgfouca/fix_acme_config_mach_xml_format
baaa2cc3 Merge pull request #1472 from mnlevy1981/mapping/runoff_to_gx1v6
00c22c0c Merge pull request #1457 from allibco/master


Modified files: git diff --name-status [previous_tag]
M	README.md
M	config/acme/machines/config_machines.xml
M	config/acme/machines/template.case.run
M	config/acme/machines/template.case.test
M	config/cesm/config_grids.xml
M	config/cesm/machines/config_machines.xml
M	config/cesm/machines/template.case.run
M	config/config_tests.xml
M	config/xml_schemas/env_mach_specific.xsd
M	scripts/Tools/case.submit
M	scripts/Tools/xmlquery
M	scripts/create_newcase
M	scripts/create_test
M	scripts/lib/CIME/SystemTests/err.py
A	scripts/lib/CIME/SystemTests/ers2.py
M	scripts/lib/CIME/XML/component.py
M	scripts/lib/CIME/XML/compsets.py
M	scripts/lib/CIME/XML/env_batch.py
M	scripts/lib/CIME/XML/env_mach_pes.py
M	scripts/lib/CIME/XML/env_mach_specific.py
M	scripts/lib/CIME/XML/generic_xml.py
M	scripts/lib/CIME/XML/grids.py
M	scripts/lib/CIME/XML/machines.py
M	scripts/lib/CIME/build.py
M	scripts/lib/CIME/case.py
M	scripts/lib/CIME/case_run.py
M	scripts/lib/CIME/case_submit.py
M	scripts/lib/CIME/code_checker.py
M	scripts/lib/CIME/test_scheduler.py
M	scripts/lib/CIME/utils.py
D	scripts/manage_case
A	scripts/query_config
M	scripts/tests/scripts_regression_tests.py
M	src/build_scripts/buildlib.gptl
M	src/components/data_comps/docn/cime_config/config_component.xml
M	src/components/data_comps/docn/docn_comp_mod.F90
M	src/components/stub_comps/satm/cime_config/config_component.xml
M	src/components/stub_comps/sesp/cime_config/config_component.xml
M	src/components/stub_comps/sglc/cime_config/config_component.xml
M	src/components/stub_comps/sice/cime_config/config_component.xml
M	src/components/stub_comps/slnd/cime_config/config_component.xml
M	src/components/stub_comps/socn/cime_config/config_component.xml
M	src/components/stub_comps/srof/cime_config/config_component.xml
M	src/components/stub_comps/swav/cime_config/config_component.xml
M	src/components/xcpl_comps/xatm/cime_config/config_component.xml
M	src/components/xcpl_comps/xglc/cime_config/config_component.xml
M	src/components/xcpl_comps/xice/cime_config/config_component.xml
M	src/components/xcpl_comps/xlnd/cime_config/config_component.xml
M	src/components/xcpl_comps/xocn/cime_config/config_component.xml
M	src/components/xcpl_comps/xrof/cime_config/config_component.xml
M	src/components/xcpl_comps/xwav/cime_config/config_component.xml
M	src/drivers/mct/cime_config/config_component_cesm.xml
M	src/drivers/mct/main/seq_diag_mct.F90
M	src/drivers/mct/shr/seq_drydep_mod.F90
M	src/drivers/mct/shr/shr_ndep_mod.F90
M	tools/Readme.configure
M	tools/configure
A	tools/mapping/gen_mapping_files/runoff_to_ocn/map_r05_to_gx1v6_nnsm_e1000r300.nml
A	tools/mapping/gen_mapping_files/runoff_to_ocn/map_rx1_to_gx1v6_nnsm_e1000r300.nml
A	tools/statistical_ensemble_test/README
M	tools/statistical_ensemble_test/ensemble.sh
D	tools/statistical_ensemble_test/ncl_library/Zscore.ncl
D	tools/statistical_ensemble_test/ncl_library/area_avg.ncl
D	tools/statistical_ensemble_test/ncl_library/create_ensemble.ncl
D	tools/statistical_ensemble_test/ncl_library/global.ncl
D	tools/statistical_ensemble_test/ncl_library/plot_rmsz.ncl
D	tools/statistical_ensemble_test/ncl_library/print.ncl
D	tools/statistical_ensemble_test/ncl_library/rmsz.ncl
D	tools/statistical_ensemble_test/ncl_library/vinterp.ncl
M	tools/statistical_ensemble_test/single_run.sh
D	tools/statistical_ensemble_test/test_run_against_ensemble.ncl
D	tools/statistical_ensemble_test/validation_test.sh

======================================================================

======================================================================

Originator: Chris Fischer
Date: 5-3-2017
Tag: cime5.3.0-alpha.11
Answer Changes: None
Tests:
       - scrtips_regression_tests.py
       - ./xmlchange --id CLM_BLDNML_OPTS --val "-bgc bgc -crop -irrig=.true."
       - ERP_D.f45_g37_rx1.A.hobart_nag
       - one off tests to make sure the new datasets are being run for the gx1v7
         but not for other resolutions.
Dependencies:

Brief Summary:
    - Update to env_mach_specific.xsd schema for unit_testing attribute and
      arguments and arg elements.
    - Remove all references to lt_archive which will not be supported in
      CESM2.0.
    - env_mach_specific.xsd schema was incomplete
    - Remove TOTAL_CORES as it was inaccurate in many cases.
    - in _check_for_invalid_args ignore quoted strings.
    - Add schemas for the 3 remaining case xml files.
    - NAG compiler needs an integer width on this read statement
    - Update queue selection to take walltime into account.
    - Add new CESM gx1v7 runoff maps for use with estuary parameterization.
    - Add a --script-root option to create_newcase.

User interface changes:
    - Removes TOTAL_CORES
    - Changes in how walltime is handled.

PR summary: git log --oneline --first-parent [previous_tag]..master
b255a7c resolve merge conflict
26dcbc4 update to env_mach_specific.xsd schema for unit_testing attribute and arguments and arg elements
3d09285 remove all references to lt_archive which will not be supported in CESM2.0
9900f32 Merge pull request #1467 from jedwards4b/schema_fix
7043e29 Merge branch 'jgfouca/remove_total_cores'
965f63e Merge pull request #1464 from ESMCI/jgfouca/remove_total_cores
6b15377 Merge pull request #1462 from jedwards4b/fix_for_quoted_args
cc323c2 Merge pull request #1461 from jedwards4b/more_schema_definitions
15297cd Merge pull request #1453 from jedwards4b/nag_aquap_fix
ce52822 Merge pull request #1450 from ESMCI/jgfouca/upgrade_queue_selection
5619a82 Merge pull request #1455 from jtruesdal/newmaps
a5da759 Merge pull request #1438 from ESMCI/mfdeakin-sandia/script_root_option


Modified files: git diff --name-status [previous_tag]
M       config/acme/config_files.xml
M       config/acme/machines/config_batch.xml
D       config/acme/machines/config_lt_archive.xml
M       config/acme/machines/config_machines.xml
D       config/acme/machines/template.lt_archive
M       config/acme/machines/userdefined_laptop_template/config_machines.xml
M       config/cesm/config_files.xml
M       config/cesm/config_grids.xml
M       config/cesm/machines/config_batch.xml
D       config/cesm/machines/config_lt_archive.xml
M       config/cesm/machines/config_machines.xml
D       config/cesm/machines/template.lt_archive
M       config/cesm/machines/userdefined_laptop_template/config_machines.xml
M       config/config_tests.xml
M       config/xml_schemas/config_batch.xsd
M       config/xml_schemas/config_machines.xsd
M       config/xml_schemas/config_machines_template.xml
A       config/xml_schemas/env_batch.xsd
A       config/xml_schemas/env_mach_pes.xsd
A       config/xml_schemas/env_mach_specific.xsd
D       scripts/Tools/README.post_process
D       scripts/Tools/lt_archive.sh
M       scripts/create_newcase
M       scripts/create_test
M       scripts/lib/CIME/XML/env_batch.py
M       scripts/lib/CIME/XML/env_mach_pes.py
M       scripts/lib/CIME/XML/env_mach_specific.py
D       scripts/lib/CIME/XML/lt_archive.py
M       scripts/lib/CIME/case.py
D       scripts/lib/CIME/case_lt_archive.py
M       scripts/lib/CIME/case_setup.py
M       scripts/lib/CIME/test_scheduler.py
M       scripts/lib/CIME/utils.py
M       scripts/tests/scripts_regression_tests.py
M       src/components/data_comps/docn/docn_comp_mod.F90
M       src/drivers/mct/cime_config/config_component.xml
======================================================================

======================================================================

Originator: Chris Fischer
Date: 5-2-207
Tag: cime5.3.0-alpha.10
Answer Changes: [None, Round Off, Climate Changing]
Tests: scripts_regression_tests.py with PIO_VERSION set to 2 in driver config_components.xml
       scripts_regression test
       ERP_Ln9.f09_f09.F1850_DONOTUSE.yellowstone_intel.cam-outfrq9s_clm5
       summarize_cprnc_diffs by hand
       code-checker
Dependencies:

Brief Summary:
    - Update to version 2.2.1 of the pio external.
    - Update the top-level READMEs.
    - New optional ndep stream from atm.
    - Creation of new aquaplanet capability in DOCN.
    - Fix typo in parse_args.
    - All command line arguments should conform. Allowed for one exception, the -value option to xmlquery.
    - ERP fix again.
    - Pick up multi-instance cprnc.out files in summarize_cprnc_diffs.
    - Fix an issue with pio1 determining if netcdf4 is available and removes a debug print statement.
    - Improve error message when config_files.xml is not found.
    - Fix pylint error.
    - Put explicit dot in paths in some instructions.
    - Remove scripts adjustment of pio settings.


User interface changes:
    - Now accepting only conforming command line arguments.

PR summary: git log --oneline --first-parent [previous_tag]..master
0dcd36c Merge pull request #1447 from jedwards4b/pio2_external_update
357ad45 Merge pull request #1432 from ESMCI/rljacob/README-cleanup
c76d946 Merge pull request #1448 from ESMCI/mvertens/ndep
e5f144d Merge pull request #1451 from ESMCI/mvertens/aquap
d4dfbf1 Merge pull request #1452 from jedwards4b/acme_run_template_fix
505ce67 Merge pull request #1393 from jedwards4b/test_cli
c1e5a38 Merge pull request #1445 from jedwards4b/erp_fix_again
f6c05d1 Merge pull request #1442 from billsacks/summarize_cprnc_multiinst
71cc74e Merge pull request #1425 from jedwards4b/pio1_fixes
aa9018a Merge pull request #1440 from jedwards4b/better_msg_for_config_files_not_found
1089e53 Merge pull request #1446 from ESMCI/jgfouca/fix_pylint_err_nml
3a498d2 Merge pull request #1371 from billsacks/source_file_from_path
ae2a5ca Add Sandia Corporation to CIME LICENSE.TXT
7692745 Merge pull request #1441 from jedwards4b/pio_default_settings


Modified files: git diff --name-status [previous_tag]

M	LICENSE.TXT
D	README
M	README.md
M	config/acme/machines/template.case.run
M	config/acme/machines/template.case.test
M	config/acme/machines/template.lt_archive
M	config/acme/machines/template.st_archive
M	config/cesm/machines/config_compilers.xml
M	config/cesm/machines/template.case.run
M	config/cesm/machines/template.case.test
M	config/cesm/machines/template.lt_archive
M	config/cesm/machines/template.st_archive
M	scripts/Tools/acme_check_env
M	scripts/Tools/bless_test_results
M	scripts/Tools/case.build
M	scripts/Tools/case.cmpgen_namelists
M	scripts/Tools/case.setup
M	scripts/Tools/case.submit
M	scripts/Tools/case_diff
M	scripts/Tools/check_case
M	scripts/Tools/check_input_data
M	scripts/Tools/check_lockedfiles
M	scripts/Tools/cime_bisect
M	scripts/Tools/code_checker
M	scripts/Tools/compare_namelists
M	scripts/Tools/compare_test_results
M	scripts/Tools/component_compare_baseline
M	scripts/Tools/component_compare_copy
M	scripts/Tools/component_compare_test
M	scripts/Tools/component_generate_baseline
M	scripts/Tools/getTiming
M	scripts/Tools/jenkins_generic_job
M	scripts/Tools/list_acme_tests
M	scripts/Tools/normalize_cases
M	scripts/Tools/pelayout
M	scripts/Tools/preview_namelists
M	scripts/Tools/save_provenance
M	scripts/Tools/simple_compare
M	scripts/Tools/testreporter.py
M	scripts/Tools/update_acme_tests
M	scripts/Tools/wait_for_tests
M	scripts/Tools/xmlchange
M	scripts/Tools/xmlconvertors/config_pes_converter.py
M	scripts/Tools/xmlconvertors/grid_xml_converter.py
M	scripts/Tools/xmlquery
M	scripts/create_clone
M	scripts/create_newcase
M	scripts/create_test
M	scripts/fortran_unit_testing/run_tests.py
M	scripts/lib/CIME/SystemTests/erp.py
M	scripts/lib/CIME/SystemTests/seq.py
M	scripts/lib/CIME/XML/env_batch.py
M	scripts/lib/CIME/XML/env_mach_specific.py
M	scripts/lib/CIME/XML/files.py
M	scripts/lib/CIME/buildlib.py
M	scripts/lib/CIME/buildnml.py
M	scripts/lib/CIME/case.py
M	scripts/lib/CIME/case_setup.py
M	scripts/lib/CIME/namelist.py
M	scripts/lib/CIME/utils.py
M	scripts/manage_case
M	scripts/manage_pes
M	scripts/query_testlists
M	scripts/tests/scripts_regression_tests.py
M	src/build_scripts/buildlib.gptl
M	src/build_scripts/buildlib.pio
M	src/components/data_comps/docn/cime_config/buildnml
M	src/components/data_comps/docn/cime_config/config_component.xml
M	src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M	src/components/data_comps/docn/docn_comp_mod.F90
M	src/drivers/mct/cime_config/namelist_definition_drv_flds.xml
M	src/drivers/mct/shr/seq_flds_mod.F90
A	src/drivers/mct/shr/shr_ndep_mod.F90
M	src/externals/pio1/pio/CMakeLists.txt
M	src/externals/pio1/pio/pionfput_mod.F90.in
M	src/externals/pio2/CMakeLists.txt
M	src/externals/pio2/CTestScript.cmake
M	src/externals/pio2/ctest/CTestEnvironment-anlworkstation.cmake
M	src/externals/pio2/ctest/CTestEnvironment-nwsc.cmake
A	src/externals/pio2/ctest/runcdash-cgd-gnu-openmpi.sh
M	src/externals/pio2/ctest/runcdash-cgd-nag.sh
M	src/externals/pio2/ctest/runcdash-nwsc-intel-mpiserial.sh
M	src/externals/pio2/ctest/runcdash-nwscla-intel.sh
M	src/externals/pio2/ctest/runctest-cgd.sh
M	src/externals/pio2/ctest/runctest-nwscla.sh
M	src/externals/pio2/doc/source/contributing_code.txt
M	src/externals/pio2/examples/c/CMakeLists.txt
A	src/externals/pio2/examples/c/darray_async.c
A	src/externals/pio2/examples/c/darray_no_async.c
M	src/externals/pio2/examples/c/example1.c
M	src/externals/pio2/src/clib/CMakeLists.txt
M	src/externals/pio2/src/clib/bget.c
M	src/externals/pio2/src/clib/config.h.in
M	src/externals/pio2/src/clib/pio.h
M	src/externals/pio2/src/clib/pio_darray.c
M	src/externals/pio2/src/clib/pio_darray_int.c
M	src/externals/pio2/src/clib/pio_file.c
M	src/externals/pio2/src/clib/pio_get_nc.c
M	src/externals/pio2/src/clib/pio_getput_int.c
M	src/externals/pio2/src/clib/pio_internal.h
M	src/externals/pio2/src/clib/pio_lists.c
M	src/externals/pio2/src/clib/pio_msg.c
M	src/externals/pio2/src/clib/pio_nc.c
M	src/externals/pio2/src/clib/pio_nc4.c
M	src/externals/pio2/src/clib/pio_put_nc.c
M	src/externals/pio2/src/clib/pio_rearrange.c
M	src/externals/pio2/src/clib/pio_spmd.c
M	src/externals/pio2/src/clib/pio_varm.c
M	src/externals/pio2/src/clib/pioc.c
M	src/externals/pio2/src/clib/pioc_sc.c
M	src/externals/pio2/src/clib/pioc_support.c
M	src/externals/pio2/tests/cunit/CMakeLists.txt
M	src/externals/pio2/tests/cunit/pio_tests.h
D	src/externals/pio2/tests/cunit/test_async_2comp.c
M	src/externals/pio2/tests/cunit/test_async_3proc.c
M	src/externals/pio2/tests/cunit/test_async_4proc.c
M	src/externals/pio2/tests/cunit/test_async_simple.c
M	src/externals/pio2/tests/cunit/test_darray_1d.c
M	src/externals/pio2/tests/cunit/test_darray_3d.c
A	src/externals/pio2/tests/cunit/test_darray_multi.c
M	src/externals/pio2/tests/cunit/test_darray_multivar.c
A	src/externals/pio2/tests/cunit/test_darray_multivar2.c
A	src/externals/pio2/tests/cunit/test_decomp_uneven.c
M	src/externals/pio2/tests/cunit/test_decomps.c
M	src/externals/pio2/tests/cunit/test_intercomm2.c
M	src/externals/pio2/tests/cunit/test_iosystem2_simple.c
M	src/externals/pio2/tests/cunit/test_pioc.c
M	src/externals/pio2/tests/cunit/test_pioc_fill.c
A	src/externals/pio2/tests/cunit/test_rearr.c
M	src/externals/pio2/tests/cunit/test_shared.c
M	src/externals/pio2/tests/cunit/test_spmd.c
M	src/externals/pio2/tests/general/ncdf_get_put.F90.in
M	src/externals/pio2/tests/general/pio_decomp_frame_tests.F90.in
M	src/externals/pio2/tests/general/util/pio_tutil.F90
M	src/share/util/shr_pio_mod.F90
M	src/share/util/shr_strdata_mod.F90
M	tools/configure
M	tools/cprnc/README
M	tools/cprnc/summarize_cprnc_diffs
M	tools/mapping/check_maps/.gitignore
M	tools/mapping/check_maps/README
M	tools/mapping/check_maps/src/ESMF_RegridWeightGenCheck.F90
M	tools/mapping/check_maps/src/Makefile
M	tools/mapping/gen_domain_files/INSTALL
M	tools/mapping/gen_domain_files/src/Makefile
M	tools/mapping/gen_mapping_files/README
A	tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/.gitignore
M	tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/README
M	tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/create_ESMF_map.sh
M	tools/mapping/gen_mapping_files/runoff_to_ocn/INSTALL
M	tools/mapping/map_field/INSTALL
M	tools/mapping/map_field/src/Makefile

======================================================================

======================================================================

Originator: Chris Fischer
Date: 4-30-2017
Tag: cime5.3.0-alpha.09
Answer Changes: None
Tests: ERP_Ln9.f09_f09.F1850_DONOTUSE.yellowstone_intel.cam-outfrq9s_clm5
       scripts_regression_tests.py --fast, hand test xmlchange and xmlquery
Dependencies:

Brief Summary:
    - Fix erp test build.
    - Add Support for '+=' in Namelists.
    - Add --component Option to preview_namelist.
    - Add --file option to xmlquery and enable option in xmlchange.

User interface changes:
    - Added support for '+=' to namelist parser.
    - Added --component option to preview_namelist.
    - New --file option in xmlquery.

PR summary: git log --oneline --first-parent [previous_tag]..master
6d8b24b Merge pull request #1444 from jedwards4b/erp_test_fix
84b7bde Merge pull request #1389 from ESMCI/erichlf/namelist/plusEqual
45af658 Merge pull request #1436 from ESMCI/erichlf/preview_namelists/component
c4d4437 Merge pull request #1419 from jedwards4b/xmlcq_fileoption


Modified files: git diff --name-status [previous_tag]

M       scripts/Tools/preview_namelists
M       scripts/Tools/xmlchange
M       scripts/Tools/xmlquery
M       scripts/lib/CIME/SystemTests/erp.py
M       scripts/lib/CIME/XML/env_mach_specific.py
M       scripts/lib/CIME/XML/env_test.py
M       scripts/lib/CIME/XML/generic_xml.py
M       scripts/lib/CIME/case.py
M       scripts/lib/CIME/namelist.py
M       scripts/lib/CIME/preview_namelists.py

======================================================================

======================================================================

Originator: Chris Fischer
Date: 4-28-2017
Tag: cime5.3.0-alpha.08
Answer Changes: [None, Round Off, Climate Changing]
Tests: scripts_regression_tests, SMS_D_Ld3.f45_g37_rx1.A.hobart_nag,
        ERS_Ln9.T62_g37.DTEST.yellowstone_intel, CESM prealpha on hobart_nag
Dependencies: cime_config0.0.1.alpha.07, cism2_1_30, clm4_5_15_r235

Brief Summary:
    - Use ESMF7 on yellowstone and cheyenne.
    - Pass annual-average fields to GLC.
    - Give users more info and control over key run commands.
    - Moves unit testing infrastructure from tools/unit_testing to
      scripts/fortran_unit_testing.
    - There were tabs in create_newcase. None prevented the script from
      running, but should be removed for consistency.
    - nag compliler needs an additional library flag when built with debug.
    - Update case members in case_setup.
    - Handle the case when executable is None.
    - Fix big mistake in scripts_regression_tests.
    - Minor changes to xmlchange.
    - Fix minor bug in test_scheduler.
    - Rewrite testreporter into python.
    - Print time built per model.
    - Add input-dir to create_newcase.
    - Get unit test build and run working with serial or parallel pFUnit.
    - Add Support of true and false in Namelist.
    - Remove the cprnc.out files prior to running tests.
    - Fix bug where LockedFiles weren't checked if there was a dot in
      filepath.
    - Addition of new dwav and dlnd compsets and functionality.
    - Errput may be empty string or None.
    - Return aprun args but use executable string from xml.
    - Add illegal char : to check_name test.
    - Simplify netcdf lib args on hobart.
    - Bug fix for DART in case_st_archive.py.
    - Get Fortran unit tests working on cheyenne.
    - Two changes to fix the Fortran unit tests that had gotten broken
      recently.
    - Improve create_test output by dumping case errors directly to screen.
    - Fix NODEFAIL test on cheyenne.
    - Fix indentation problem in case_setup.
    - Allow user_mods directory in compset definition.
    - Fix typo in cori-knl bind command.
    - Big cs.status upgrade.
    - Force user to always go through case.submit.
    - Promote to warning if machine doesn't match probed machine.
    - Make Machines.get_value more likely to return values of the correct
      type.
    - Remove conditional pio1 code.
    - Fixes for PRE test.
    - Set rearr opts using a pio interface.
    - Bring in latest version of PIO1 to CIME.

User interface changes:
    - Moves run_tests.py to scripts/fortran_unit_testing.
    - Adds PET test to cime_developer, PET behavior change.
    - Output time per built component.
    - config_compilers should now give MPILIB and compile_threaded
      attributes for PFUNIT.
    - The default mode of operation for run_tests.py is now serial.
    - Other components that have unit tests (CLM and CAM) will need to
      rework their top-level CMakeLists.txt file slightly.
    - Do not allow ':' in testid or case name.
    - Output changes for create_test.
    - Significant to cs.status.
    - Minor output changes to create_newcase.
    - New PIO1 interface to set rearranger options.
    - Signficant: new preview_run tool and new XML variables.


PR summary: git log --oneline --first-parent [previous_tag]..master
6d8ccb3 Merge pull request #1403 from fvitt/esmf
fe82bd6 Merge pull request #1413 from billsacks/billsacks/glc_tavg_v2
dc29942 Merge pull request #1359 from ESMCI/jgfouca/new_query_tools
9c5b1aa Merge pull request #1428 from billsacks/move_unit_tests
c726ded Merge pull request #1435 from ESMCI/erichlf/create_newcase/tabs2spaces
8924bb3 Merge pull request #1421 from jedwards4b/hobart_nag_fix
f59dd4d Merge pull request #1414 from ESMCI/jgfouca/pet_fix_plus_coverage
67b1be7 Merge pull request #1410 from jedwards4b/executable_none_fix
0fe9e3d Merge pull request #1412 from ESMCI/jgfouca/fix_scripts_regr_test_rc
7c28d90 Merge pull request #1405 from ESMCI/jgfouca/xmlchange_append_add_space
68ab80b Merge pull request #1406 from ESMCI/jgfouca/test_sched_bugfix
da9d3b8 Merge pull request #1299 from ESMCI/fischer/testreporter_rewrite_python
f8f0fec Merge pull request #1402 from ESMCI/jgfouca/show_build_time_per_component
dc1a7ce Merge pull request #1401 from ESMCI/jgfouca/add_input_dir_to_create_newcase
962b20b Merge pull request #1396 from billsacks/compiler_from_macros
af32abd Merge pull request #1395 from ESMCI/erichlf/Build/Namelist.pm
9f5d489 Merge pull request #1394 from jedwards4b/system_test_rerun_improvement
1db632a Merge pull request #1391 from ESMCI/sarich/fix_bug_in_check_lockedfiles
5cda778 Merge pull request #1365 from ESMCI/mvertens/data_wave
2742c17 Merge pull request #1390 from ESMCI/jgfouca/fix_bug_in_errput_run_cmd
6dd85dd Merge pull request #1385 from jedwards4b/aprun_fix
4fb16a1 Merge pull request #1383 from jedwards4b/new_illegal_char
40a6017 Merge pull request #1386 from jedwards4b/hobart_netcdf_slib_fix
5a141f8 Merge pull request #1375 from ESMCI/bertinia/st_archive
06c5645 Merge pull request #1381 from billsacks/cheyenne_unit_tests
9629886 Merge pull request #1378 from jedwards4b/funit_test_fix
d79922e Merge pull request #1377 from ESMCI/jgfouca/improve_create_test_output
9d9f09c Merge pull request #1370 from ESMCI/jgfouca/minor_fix_for_cheyenne
a99eab3 Merge pull request #1373 from jedwards4b/pio_adjust_indentation_fix
ca289d9 Merge pull request #1366 from ESMCI/mvertens/usermods_in_compset
aaee38a Merge pull request #1369 from jedwards4b/cori-knlfix
d0e277d Merge pull request #1363 from ESMCI/jgfouca/big_cs_status_upgrade
dd5a30b Merge pull request #1362 from ESMCI/jgfouca/force_resubmit_to_use_submit
8282a8f Merge pull request #1361 from ESMCI/jgfouca/inform_user_of_machine
2530c66 Merge pull request #1360 from ESMCI/jgfouca/machine_get_value_type
1335a62 Merge pull request #1357 from ESMCI/jayeshkrishna/rem_cond_pio1_code
9903472 Merge pull request #1350 from gold2718/pausePOP
9f9da67 Merge pull request #1354 from ESMCI/jayeshkrishna/pio_use_set_rearr_opts
be0f9a4 Merge pull request #1352 from ESMCI/jayeshkrishna/bring_latest_pio1


Modified files: git diff --name-status [previous_tag]

M	CMakeLists.txt
D	README.unit_testing
M	config/acme/machines/config_compilers.xml
M	config/acme/machines/userdefined_laptop_template/config_compilers.xml
M	config/cesm/config_grids.xml
M	config/cesm/machines/config_compilers.xml
M	config/cesm/machines/config_machines.xml
M	config/cesm/machines/userdefined_laptop_template/config_compilers.xml
M	config/config_tests.xml
M	config/xml_schemas/config_compsets.xsd
M	config/xml_schemas/config_grids_v2.xsd
M	config/xml_schemas/config_machines.xsd
A	scripts/Tools/cs.status
D	scripts/Tools/cs_status
A	scripts/Tools/preview_run
A	scripts/Tools/testreporter.py
M	scripts/Tools/xmlchange
M	scripts/create_newcase
M	scripts/create_test
A	scripts/fortran_unit_testing/Examples/circle_area/src/CMakeLists.txt
A	scripts/fortran_unit_testing/Examples/circle_area/src/circle.F90
A	scripts/fortran_unit_testing/Examples/circle_area/tests/CMakeLists.txt
A	scripts/fortran_unit_testing/Examples/circle_area/tests/CTest/CMakeLists.txt
A	scripts/fortran_unit_testing/Examples/circle_area/tests/CTest/test_driver.F90
A	scripts/fortran_unit_testing/Examples/circle_area/tests/pFUnit/CMakeLists.txt
A	scripts/fortran_unit_testing/Examples/circle_area/tests/pFUnit/test_circle.pf
A	scripts/fortran_unit_testing/Examples/interpolate_1d/src/CMakeLists.txt
A	scripts/fortran_unit_testing/Examples/interpolate_1d/src/interpolate_1d.F90
A	scripts/fortran_unit_testing/Examples/interpolate_1d/tests/CMakeLists.txt
A	scripts/fortran_unit_testing/Examples/interpolate_1d/tests/CTest/CMakeLists.txt
A	scripts/fortran_unit_testing/Examples/interpolate_1d/tests/CTest/test_driver.F90
A	scripts/fortran_unit_testing/Examples/interpolate_1d/tests/pFUnit/CMakeLists.txt
A	scripts/fortran_unit_testing/Examples/interpolate_1d/tests/pFUnit/test_interpolate_point.pf
A	scripts/fortran_unit_testing/Examples/test_list.xml
A	scripts/fortran_unit_testing/README
A	scripts/fortran_unit_testing/python/.gitignore
A	scripts/fortran_unit_testing/python/printer.py
A	scripts/fortran_unit_testing/python/test_xml_test_list.py
A	scripts/fortran_unit_testing/python/xml_test_list.py
A	scripts/fortran_unit_testing/run_tests.py
M	scripts/lib/CIME/BuildTools/cmakemacroswriter.py
M	scripts/lib/CIME/BuildTools/configure.py
M	scripts/lib/CIME/SystemTests/nck.py
M	scripts/lib/CIME/SystemTests/nodefail.py
M	scripts/lib/CIME/SystemTests/pre.py
M	scripts/lib/CIME/SystemTests/system_tests_common.py
M	scripts/lib/CIME/XML/compsets.py
M	scripts/lib/CIME/XML/env_batch.py
M	scripts/lib/CIME/XML/env_mach_specific.py
M	scripts/lib/CIME/XML/machines.py
A	scripts/lib/CIME/XML/test_reporter.py
M	scripts/lib/CIME/aprun.py
M	scripts/lib/CIME/build.py
M	scripts/lib/CIME/case.py
M	scripts/lib/CIME/case_run.py
M	scripts/lib/CIME/case_setup.py
M	scripts/lib/CIME/case_st_archive.py
M	scripts/lib/CIME/case_test.py
M	scripts/lib/CIME/check_lockedfiles.py
M	scripts/lib/CIME/code_checker.py
M	scripts/lib/CIME/nmlgen.py
M	scripts/lib/CIME/test_scheduler.py
M	scripts/lib/CIME/test_status.py
A	scripts/lib/CIME/tests/test_user_mod_support.py
M	scripts/lib/CIME/user_mod_support.py
M	scripts/lib/CIME/utils.py
M	scripts/lib/cs.status.template
A	scripts/lib/testreporter.template
M	scripts/lib/update_acme_tests.py
M	scripts/tests/scripts_regression_tests.py
M	src/components/data_comps/datm/cime_config/config_component.xml
M	src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M	src/components/data_comps/datm/datm_comp_mod.F90
M	src/components/data_comps/desp/desp_comp_mod.F90
M	src/components/data_comps/desp/esp_comp_mct.F90
M	src/components/data_comps/dice/cime_config/config_component.xml
M	src/components/data_comps/dice/cime_config/namelist_definition_dice.xml
M	src/components/data_comps/dice/dice_comp_mod.F90
M	src/components/data_comps/dlnd/cime_config/buildnml
M	src/components/data_comps/dlnd/cime_config/config_component.xml
M	src/components/data_comps/docn/cime_config/config_component.xml
M	src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M	src/components/data_comps/docn/docn_comp_mod.F90
M	src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M	src/components/data_comps/drof/drof_comp_mod.F90
M	src/components/data_comps/dwav/cime_config/buildnml
M	src/components/data_comps/dwav/cime_config/config_component.xml
M	src/components/data_comps/dwav/cime_config/namelist_definition_dwav.xml
M	src/components/data_comps/dwav/dwav_comp_mod.F90
M	src/drivers/mct/cime_config/buildexe
M	src/drivers/mct/cime_config/buildnml
M	src/drivers/mct/cime_config/config_component.xml
M	src/drivers/mct/cime_config/config_component_acme.xml
M	src/drivers/mct/cime_config/config_component_cesm.xml
M	src/drivers/mct/cime_config/config_compsets.xml
M	src/drivers/mct/cime_config/namelist_definition_drv.xml
M	src/drivers/mct/main/cesm_comp_mod.F90
M	src/drivers/mct/main/prep_glc_mod.F90
M	src/drivers/mct/main/seq_io_mod.F90
M	src/drivers/mct/main/seq_rest_mod.F90
M	src/drivers/mct/shr/seq_comm_mct.F90
M	src/drivers/mct/shr/seq_infodata_mod.F90
M	src/drivers/mct/shr/seq_timemgr_mod.F90
M	src/drivers/mct/unit_test/CMakeLists.txt
M	src/drivers/mct/unit_test/stubs/CMakeLists.txt
A	src/drivers/mct/unit_test/stubs/seq_timemgr_mod.F90
A	src/externals/CMake/CIME_initial_setup.cmake
M	src/externals/CMake/CIME_utils.cmake
M	src/externals/CMake/README.md
M	src/externals/CMake/pFUnit_utils.cmake
M	src/externals/pio1/pio/CMakeLists.txt
M	src/externals/pio1/pio/pio.F90
M	src/externals/pio1/pio/piolib_mod.F90
M	src/share/unit_test_stubs/pio/pio.F90.in
M	src/share/util/shr_pio_mod.F90
D	tools/unit_testing/Examples/circle_area/src/CMakeLists.txt
D	tools/unit_testing/Examples/circle_area/src/circle.F90
D	tools/unit_testing/Examples/circle_area/tests/CMakeLists.txt
D	tools/unit_testing/Examples/circle_area/tests/CTest/CMakeLists.txt
D	tools/unit_testing/Examples/circle_area/tests/CTest/test_driver.F90
D	tools/unit_testing/Examples/circle_area/tests/pFUnit/CMakeLists.txt
D	tools/unit_testing/Examples/circle_area/tests/pFUnit/test_circle.pf
D	tools/unit_testing/Examples/interpolate_1d/src/CMakeLists.txt
D	tools/unit_testing/Examples/interpolate_1d/src/interpolate_1d.F90
D	tools/unit_testing/Examples/interpolate_1d/tests/CMakeLists.txt
D	tools/unit_testing/Examples/interpolate_1d/tests/CTest/CMakeLists.txt
D	tools/unit_testing/Examples/interpolate_1d/tests/CTest/test_driver.F90
D	tools/unit_testing/Examples/interpolate_1d/tests/pFUnit/CMakeLists.txt
D	tools/unit_testing/Examples/interpolate_1d/tests/pFUnit/test_interpolate_point.pf
D	tools/unit_testing/Examples/test_list.xml
D	tools/unit_testing/README
D	tools/unit_testing/python/.gitignore
D	tools/unit_testing/python/comparable.py
D	tools/unit_testing/python/environment.py
D	tools/unit_testing/python/machine_setup.py
D	tools/unit_testing/python/printer.py
D	tools/unit_testing/python/test_environment.py
D	tools/unit_testing/python/test_xml_test_list.py
D	tools/unit_testing/python/test_xml_utils.py
D	tools/unit_testing/python/xml_test_list.py
D	tools/unit_testing/python/xml_utils.py
D	tools/unit_testing/run_tests.py
M	utils/perl5lib/Build/Namelist.pm
======================================================================

======================================================================

Originator: Chris Fischer
Date: 4-14-2017
Tag: cime5.3.0-alpha.07
Answer Changes: None
Tests on various PRs: by-hand, code_checker, pylint, scripts_regression_tests,
       cime_developer with gnu compiler on cheyenne, All gnu debug tests in CESM
       test suites, create B compset with ww3 at T31 resolution,
       J_TestCreateNewcase, some cesm tests on cori-knl
Dependencies:

Brief Summary:
	-Updates to get going on cori-knl
	-Update domain_b in nnsm map
	-Fix bug where create_test was not handling user-selected projects correctly
	 in the case where the test_root depended on PROJECT.
	-HOMME Improvement
	-Unit testing: Determine machine-specific settings automatically
	-Mapping/update runoff to ocn
	-Fixes an issue with --user-compset flag
	-Fixes for cheyenne issue
	-Validate the case and test_id arguments
	-Add more checks for gnu in debug mode.
	-Avoid a problem with pio_typename in clone with keepexe.
	-Fix blues NETCDFROOT unresolved error.
	-Fix TOTAL_CORES.
	-Refactor BUILD_THREADED to match documentation.
	-Refactor run_cmd to handle file output streams more easily.
	-More-robust way of getting path to create_test.
	-Better content in TestStatus.log file.
	-Improved formatting/content of TestStatus.log
	-Better handling of poorly implemented batch systems.
	-Fix atm grid match for T31 atm2wav map.
	-Change flag for answer to create_newcase
	-Fix bug in xmlquery, add regr test to catch in future
	-Improve error message when user forgets --user-compset.
	-Cleanup TEST_ROOT if everything works.
	-Reduce newlines in CaseStatus.

User interface changes:
	-BUILD_THREADED behaves differently
	-for create_newcase, --answer becomes --handle-preexisting-dirs
	-Formatting changes to CaseStatus

PR summary: git log --oneline --first-parent [previous_tag]..master
30243ac Merge pull request #1351 from jedwards4b/cori_update
1f4c4e9 Merge pull request #1349 from mnlevy1981/mapping/runoff_metadata_bugfix
7664249 Merge pull request #1348 from ESMCI/jgfouca/fix_custom_proj_test_root
6156e0a Merge pull request #1346 from ESMCI/jgfouca/homme_improvement
3779ec1 Merge pull request #1343 from billsacks/run_tests_defaults
5074c4a Merge pull request #1280 from mnlevy1981/mapping/update_runoff_to_ocn
60bfc01 Merge pull request #1341 from jedwards4b/user-compset
5e79b04 Merge pull request #1340 from jedwards4b/cheyenne_fixes
37aac0f Merge pull request #1337 from jedwards4b/validate_case_and_test_id_args
5edf3fa Merge pull request #1339 from billsacks/gnu_debug_checks
82b6181 Merge pull request #1305 from jedwards4b/clone_keepexe_and_pio_typename
4d62d80 Merge pull request #1333 from ESMCI/sarich/fix-blues-netcdfroot
12bc9b3 Merge pull request #1336 from ESMCI/jgfouca/fix_total_cores
1adf8d1 Merge pull request #1335 from ESMCI/jgfouca/cleanup_build_threaded
315e849 Merge pull request #1326 from ESMCI/jgfouca/refactor_run_cmd
997ec60 Merge pull request #1321 from ESMCI/jgfouca/cime_bisect_robustness
cb7bd10 Merge pull request #1317 from ESMCI/jgfouca/better_testlog_content
7fb258b Merge pull request #1316 from ESMCI/jgfouca/handle_titan_batch_errs
2b4f7fe Merge pull request #1320 from billsacks/t31_wav_map
7370b02 Merge pull request #1311 from ESMCI/jgfouca/better_name_for_answer
b14ebe0 Merge pull request #1312 from ESMCI/jgfouca/fix_xmlquery_listall
f741180 Merge pull request #1314 from billsacks/user_compset_errmsg
243fafa Merge pull request #1310 from ESMCI/jgfouca/better_regr_cleanup
a4c7ab7 Merge pull request #1307 from ESMCI/jgfouca/remove_useless_newlines_from_casestatus


Modified files: git diff --name-status [previous_tag]
M	README.unit_testing
M	config/acme/machines/config_machines.xml
M	config/cesm/config_grids.xml
M	config/cesm/machines/config_batch.xml
M	config/cesm/machines/config_compilers.xml
M	config/cesm/machines/config_machines.xml
M	config/cesm/machines/config_pio.xml
M	config/xml_schemas/config_machines.xsd
M	scripts/Tools/cime_bisect
M	scripts/Tools/xmlquery
M	scripts/create_clone
M	scripts/create_newcase
M	scripts/create_test
M	scripts/lib/CIME/SystemTests/erp.py
M	scripts/lib/CIME/SystemTests/homme.py
M	scripts/lib/CIME/SystemTests/system_tests_common.py
M	scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M	scripts/lib/CIME/XML/compsets.py
M	scripts/lib/CIME/XML/entry_id.py
M	scripts/lib/CIME/XML/env_base.py
M	scripts/lib/CIME/XML/env_batch.py
M	scripts/lib/CIME/XML/env_mach_specific.py
M	scripts/lib/CIME/XML/machines.py
M	scripts/lib/CIME/aprun.py
M	scripts/lib/CIME/build.py
M	scripts/lib/CIME/case.py
M	scripts/lib/CIME/case_run.py
M	scripts/lib/CIME/case_setup.py
M	scripts/lib/CIME/case_st_archive.py
M	scripts/lib/CIME/hist_utils.py
M	scripts/lib/CIME/preview_namelists.py
M	scripts/lib/CIME/provenance.py
M	scripts/lib/CIME/test_scheduler.py
M	scripts/lib/CIME/utils.py
M	scripts/lib/CIME/wait_for_tests.py
M	scripts/tests/scripts_regression_tests.py
M	src/drivers/mct/cime_config/config_component.xml
M	src/externals/pio1/timing/COPYING
M	src/externals/pio2/src/gptl/COPYING
M	src/share/timing/COPYING
M	src/share/util/mct_mod.F90
M	tools/mapping/gen_mapping_files/runoff_to_ocn/INSTALL
M	tools/mapping/gen_mapping_files/runoff_to_ocn/README
A	tools/mapping/gen_mapping_files/runoff_to_ocn/map_r05_to_gx1v7_nnsm_e1000r300.nml
A	tools/mapping/gen_mapping_files/runoff_to_ocn/map_r05_to_gx3v7_nnsm_e1000r500.nml
A	tools/mapping/gen_mapping_files/runoff_to_ocn/map_rx1_to_gx1v7_nnsm_e1000r300.nml
A	tools/mapping/gen_mapping_files/runoff_to_ocn/map_rx1_to_gx3v7_nnsm_e1000r500.nml
A	tools/mapping/gen_mapping_files/runoff_to_ocn/map_wr50a_to_ar9v4_nnsm_e1000r300.nml
A	tools/mapping/gen_mapping_files/runoff_to_ocn/map_wr50a_to_gx3v7_nnsm_e1000r300.nml
A	tools/mapping/gen_mapping_files/runoff_to_ocn/maps/.gitignore
A	tools/mapping/gen_mapping_files/runoff_to_ocn/ncl/merge_mapping_files.ncl
A	tools/mapping/gen_mapping_files/runoff_to_ocn/run_merge_mapping_files.sh
D	tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map.nml
D	tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_r05_gx3v7.nml
D	tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_rx1_gx1v6.nml
D	tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_tx01.nml
D	tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_wr50a_ar9v4.nml
D	tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_wr50a_gx3v7.nml
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/Makefile
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/fixroff_mod.F90
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/kind_mod.F90
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/main.F90
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/map_mod.F90
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/mapsort_mod.F90
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/shr_kind_mod.F90
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/shr_sys_mod.F90
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/shr_timer_mod.F90
M	tools/mapping/gen_mapping_files/runoff_to_ocn/src/smooth_mod.F90
M	tools/unit_testing/run_tests.py

======================================================================

Originator:Chris Fischer
Date: 4-4-2017
Tag: cime5.3.0-alpha.06
Answer Changes: None
Tests: code_checker, NODEFAIL
Dependencies:

Brief Summary:
    - Fix handling of spare nodes

User interface changes:

PR summary: git log --oneline --first-parent [previous_tag]..master
95019a3 Merge pull request #1302 from ESMCI/jgfouca/fixes_to_recent_prs

Modified files: git diff --name-status [previous_tag]
M       scripts/lib/CIME/XML/env_mach_pes.py
M       scripts/lib/CIME/case.py
M       scripts/lib/CIME/case_run.py

======================================================================

Originator: Chris Fischer
Date: 4-4-2017
Tag: cime5.3.0-alpha.05
Answer Changes: None
Tests: scripts_regression_test, code checker
Dependencies:

Brief Summary:
    - First try to support titan restart.
    - Pull back ACME repo changes of CIME since last subtree split (late
      January?) up to March 29 back into CIME master.
    - Allow a custom input root through create_test.
    - Update pio stubs to include new derived field needed in pio_init.
    - Set a default value for esmf_logging so it does not have to appear in
      drv_in.
    - Add logging options to ESMF_Initialize
    - Fix pylint issues.
    - Fix manage_case --query-grids for cesm.
    - Adds support for namelist entries of the form foo(3) = 'a'
    - Add mpilib and compiler command line options to configure.
    - summarize_cprnc_diffs: Print unnormalized RMS diffs.
    - Make sure pio_typename is valid.
    - New hooks for runnning external scripts for pre-run and post-run.
    - Enable PIO rearranger options for PIO2.
    - code_checker needs to work outside of ESMCI/CIME.
    - Fix pylint error in buildnml.
    - Add flags to make create_newcase non-interactive.
    - Added mct/cime_config/namelist_definition_drv_flds.xml with updated
      schema.
    - Some driver code no longer needed to do this for cam.
    - Supress a future warning on the use of condition in expect subroutine.
    - Couple fixes to recent PR that added SUBMIT phase.

User interface changes:
    - Add --input-dir argument to create_test
    - esmf_logging (and therefore drv_in) are now optional
    - New run time XML variable: ESMF_LOGFILE_KIND
    - New --answer flag to create_newcase
    - Removes a distracting warning

PR summary: git log --oneline --first-parent [previous_tag]..master
eeb1e2c Merge pull request #1275 from ESMCI/jgfouca/titan_restart
fbf1b0c Merge pull request #1287 from ESMCI/agsalin/merge-from-acme-03292017
dda631e Merge pull request #1298 from ESMCI/jgfouca/allow_custom_input_root
2dc9a8a Merge pull request #1301 from jedwards4b/unit_test_stubs_update
3d76b10 Merge pull request #1300 from gold2718/esmfLog
0d320ec Merge pull request #1289 from gold2718/esmfLog
8890873 Merge pull request #1290 from ESMCI/jgfouca/grids_pylint_fixes
55a084b Merge pull request #1285 from ESMCI/mvertens/manage_case
9d8396a Merge pull request #1259 from jedwards4b/index_in_namelist
4e125ee Merge pull request #1268 from jedwards4b/configure_update
9759e15 Merge pull request #1279 from billsacks/summarize_rms
840ae3c Merge pull request #1273 from jedwards4b/pio_typename_fix
07e61ed Merge pull request #1256 from ESMCI/mvertens/phys_cycle
85f831d Merge pull request #1260 from ESMCI/jayeshkrishna/enable_rearr_opts_pio2
fbfa996 Merge pull request #1269 from ESMCI/jgfouca/code_checker_work_outside_esmci
300cbf3 Merge pull request #1253 from ESMCI/jgfouca/pylint_fix_to_buildnml
d44970c Merge pull request #1249 from ESMCI/jgfouca/create_newcase_non_interactive
8270602 Merge pull request #1231 from ESMCI/mvertens/drv_flds_in
5f3072c Merge pull request #1237 from jedwards4b/jpe_fix_atm_simple_settings
ffa61ea Merge pull request #1242 from jedwards4b/jpe/futurewarning
fecaaad Merge pull request #1240 from ESMCI/jgfouca/fixes_to_submit_phase_pr


Modified files: git diff --name-status [previous_tag]
M	config/acme/allactive/config_pes.xml
M	config/acme/allactive/config_pesall.xml
M	config/acme/config_archive.xml
M	config/acme/config_files.xml
M	config/acme/config_grids.xml
M	config/acme/machines/Makefile
M	config/acme/machines/config_batch.xml
M	config/acme/machines/config_compilers.xml
M	config/acme/machines/config_machines.xml
M	config/acme/machines/config_pio.xml
A	config/acme/machines/syslog.anvil
A	config/acme/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
A	config/acme/testmods_dirs/allactive/force_netcdf_pio/shell_commands
A	config/acme/testmods_dirs/allactive/force_netcdf_pio/xmlchange_cmnds
M	config/cesm/config_files.xml
M	config/cesm/config_grids.xml
M	config/cesm/machines/config_pio.xml
M	config/config_tests.xml
M	scripts/Tools/check_input_data
M	scripts/create_newcase
M	scripts/create_test
M	scripts/lib/CIME/BuildTools/configure.py
M	scripts/lib/CIME/BuildTools/macrowriterbase.py
M	scripts/lib/CIME/SystemTests/dae.py
M	scripts/lib/CIME/SystemTests/homme.py
A	scripts/lib/CIME/SystemTests/nodefail.py
M	scripts/lib/CIME/XML/compilers.py
M	scripts/lib/CIME/XML/entry_id.py
M	scripts/lib/CIME/XML/env_batch.py
M	scripts/lib/CIME/XML/env_mach_pes.py
M	scripts/lib/CIME/XML/env_mach_specific.py
M	scripts/lib/CIME/XML/grids.py
M	scripts/lib/CIME/XML/namelist_definition.py
A	scripts/lib/CIME/aprun.py
M	scripts/lib/CIME/bless_test_results.py
M	scripts/lib/CIME/build.py
M	scripts/lib/CIME/buildnml.py
M	scripts/lib/CIME/case.py
M	scripts/lib/CIME/case_run.py
M	scripts/lib/CIME/case_setup.py
M	scripts/lib/CIME/case_st_archive.py
M	scripts/lib/CIME/case_submit.py
M	scripts/lib/CIME/code_checker.py
M	scripts/lib/CIME/get_timing.py
M	scripts/lib/CIME/namelist.py
M	scripts/lib/CIME/nmlgen.py
M	scripts/lib/CIME/preview_namelists.py
M	scripts/lib/CIME/test_scheduler.py
M	scripts/lib/CIME/utils.py
M	scripts/lib/update_acme_tests.py
M	scripts/manage_case
M	scripts/tests/scripts_regression_tests.py
M	src/build_scripts/buildlib.pio
M	src/components/data_comps/datm/cime_config/buildnml
M	src/components/data_comps/desp/cime_config/buildnml
M	src/components/data_comps/dice/cime_config/buildnml
M	src/components/data_comps/dlnd/cime_config/buildnml
M	src/components/data_comps/docn/cime_config/buildnml
M	src/components/data_comps/drof/cime_config/buildnml
M	src/components/data_comps/dwav/cime_config/buildnml
D	src/drivers/mct/bld/namelist_files/namelist_defaults_drv.xml
D	src/drivers/mct/bld/namelist_files/namelist_definition_drv.xml
D	src/drivers/mct/bld/namelist_files/namelist_definition_drv_flds.xml
D	src/drivers/mct/bld/namelist_files/namelist_definition_modio.xml
D	src/drivers/mct/bld/testdir/Buildconf/camconf/drv_flds_in
D	src/drivers/mct/bld/testdir/Buildconf/clmconf/drv_flds_in
D	src/drivers/mct/bld/testdir/env_build.xml
D	src/drivers/mct/bld/testdir/env_case.xml
D	src/drivers/mct/bld/testdir/env_mach_pes.xml
D	src/drivers/mct/bld/testdir/env_run.xml
D	src/drivers/mct/bld/testdir/runtest
D	src/drivers/mct/bld/testdir/user_nl_cpl
M	src/drivers/mct/cime_config/buildnml
M	src/drivers/mct/cime_config/config_component.xml
M	src/drivers/mct/cime_config/config_component_acme.xml
M	src/drivers/mct/cime_config/namelist_definition_drv.xml
A	src/drivers/mct/cime_config/namelist_definition_drv_flds.xml
M	src/drivers/mct/main/cesm_driver.F90
M	src/drivers/mct/shr/seq_comm_mct.F90
M	src/externals/pio1/pio/CMakeLists.txt
M	src/share/esmf_wrf_timemgr/ESMF_Stubs.F90
M	src/share/unit_test_stubs/pio/pio.F90.in
M	src/share/util/shr_pio_mod.F90
M	tools/Readme.configure
M	tools/configure
M	tools/cprnc/summarize_cprnc_diffs
M	tools/mapping/map_field/src/map_field.F90

======================================================================

Originator: Chris Fischer
Date: 3-14-2017
Tag: cime5.3.0-alpha.04
Answer Changes: Answer changes for gx3v7
Tests: scripts_regression_test, SMS.f09_g16.B1850
Dependencies:

Brief Summary:
  -Need to set RTM to NULL in both cases in order to have this work with fix
   needed for upcoming pythonization of rtm and mosart buildnml
  -Improve create_test output
  -Remove a misleading print statement from tests.
  -Better way to handle batch errors.
  -Change in location of $SRCROOT/config/allactive to $SRCROOT/cime_config.
  -Update so that all relevent grids contain a mask variable.

User interface changes: New SUBMIT phase!

PR summary: git log --oneline --first-parent [previous_tag]..master
34a244a Merge pull request #1239 from ESMCI/mvertens/fix_ssptest
867711d Merge pull request #1238 from ESMCI/jgfouca/create_test_better_output
d050c08 Merge pull request #1235 from jedwards4b/mask_updates
5058c33 Merge pull request #1234 from ESMCI/fischer/config_cesm_allactive_mv
64d6bd2 Merge pull request #1230 from ESMCI/jgfouca/add_submit_phase_2
dec7437 Merge pull request #1232 from jedwards4b/remove_incorrect_statement



Modified files: git diff --name-status [previous_tag]
M       config/cesm/config_files.xml
M       config/cesm/config_grids.xml
M       config/xml_schemas/config_grids_v2.xsd
M       scripts/lib/CIME/SystemTests/ssp.py
M       scripts/lib/CIME/SystemTests/system_tests_common.py
M       scripts/lib/CIME/XML/env_batch.py
M       scripts/lib/CIME/case_submit.py
M       scripts/lib/CIME/case_test.py
M       scripts/lib/CIME/test_scheduler.py
M       scripts/lib/CIME/test_status.py
M       scripts/tests/scripts_regression_tests.p

======================================================================
Originator: Chris Fischer
Date: 3-11-2017
Tag: cime5.3.0-alpha.03
Answer Changes: None
Tests: scripts_regression_tests, various CESM tests.
Dependencies:

Brief Summary:
   Added new aliases for resolutions supporting a gx1v7 mask.
   Move location of config/cesm/allactive.
   Get rid of hard coded comp_class settings and use get_values instead.
   Fix build model message.
   Ignore prereq if forced.
   Additional include path needed for cmake check_function_exists.
   PIO 2 import.

User interface changes:

PR summary: git log --oneline --first-parent [previous_tag]..master
   3627e16 Merge pull request #1228 from jtruesdal/add_gx1v7
   7b10920 Merge pull request #1227 from ESMCI/fischer/config_cesm_allactive_mv
   ab579b3 Merge pull request #1226 from jedwards4b/compclasses_cleanup
   dc0a87c Merge pull request #1225 from ESMCI/jgfouca/fix_build_msg
   5f4f989 Merge pull request #1218 from jedwards4b/ignore_prereq_if_forced
   ff3d97f Merge pull request #1219 from jedwards4b/cmake_module_fix
   37fe05b Merge pull request #1202 from jedwards4b/pio2_import

Modified files: git diff --name-status [previous_tag]
M	config/acme/machines/Makefile
M	config/cesm/config_files.xml
M	config/cesm/config_grids.xml
M	config/cesm/machines/Makefile
M	scripts/lib/CIME/SystemTests/pem.py
M	scripts/lib/CIME/SystemTests/pet.py
M	scripts/lib/CIME/XML/env_batch.py
M	scripts/lib/CIME/build.py
M	scripts/lib/CIME/get_timing.py
M	scripts/lib/CIME/test_scheduler.py
M	src/build_scripts/buildlib.pio
M	src/components/data_comps/docn/cime_config/config_component.xml
M	src/externals/pio2/CMakeLists.txt
M	src/externals/pio2/CTestConfig.cmake
M	src/externals/pio2/CTestScript.cmake
M	src/externals/pio2/cmake/FindNetCDF.cmake
M	src/externals/pio2/cmake/LibCheck.cmake
M	src/externals/pio2/cmake/LibMPI.cmake
A	src/externals/pio2/cmake/mpiexec.nwscla
A	src/externals/pio2/cmake/mpiexec.olcf
A	src/externals/pio2/ctest/CTestEnvironment-anlworkstation.cmake
M	src/externals/pio2/ctest/CTestEnvironment-nwsc.cmake
A	src/externals/pio2/ctest/CTestEnvironment-nwscla.cmake
M	src/externals/pio2/ctest/runcdash-alcf-ibm.sh
A	src/externals/pio2/ctest/runcdash-anlworkstation.sh
M	src/externals/pio2/ctest/runcdash-cgd-nag.sh
M	src/externals/pio2/ctest/runcdash-nersc-cray.sh
M	src/externals/pio2/ctest/runcdash-nersc-intel.sh
M	src/externals/pio2/ctest/runcdash-nwsc-gnu.sh
M	src/externals/pio2/ctest/runcdash-nwsc-intel-mpiserial.sh
M	src/externals/pio2/ctest/runcdash-nwsc-intel.sh
M	src/externals/pio2/ctest/runcdash-nwsc-pgi.sh
A	src/externals/pio2/ctest/runcdash-nwscla-intel.sh
A	src/externals/pio2/ctest/runctest-anlworkstation.sh
M	src/externals/pio2/ctest/runctest-cgd.sh
M	src/externals/pio2/ctest/runctest-nersc.sh
A	src/externals/pio2/ctest/runctest-nwscla.sh
M	src/externals/pio2/doc/CMakeLists.txt
M	src/externals/pio2/doc/Doxyfile.in
M	src/externals/pio2/doc/source/Error.txt
M	src/externals/pio2/doc/source/Examples.txt
M	src/externals/pio2/doc/source/Installing.txt
A	src/externals/pio2/doc/source/Testing.txt
M	src/externals/pio2/doc/source/base.txt
A	src/externals/pio2/doc/source/contributing_code.txt
M	src/externals/pio2/doc/source/mach_walkthrough.txt
M	src/externals/pio2/examples/CMakeLists.txt
M	src/externals/pio2/examples/c/CMakeLists.txt
M	src/externals/pio2/examples/c/example1.c
M	src/externals/pio2/examples/c/example2.c
M	src/externals/pio2/examples/c/examplePio.c
A	src/externals/pio2/examples/c/valsupp_example1.supp
M	src/externals/pio2/examples/f03/CMakeLists.txt
M	src/externals/pio2/examples/f03/examplePio.f90
M	src/externals/pio2/src/CMakeLists.txt
M	src/externals/pio2/src/clib/CMakeLists.txt
M	src/externals/pio2/src/clib/bget.c
M	src/externals/pio2/src/clib/bget.h
M	src/externals/pio2/src/clib/config.h.in
D	src/externals/pio2/src/clib/ncparser.pl
D	src/externals/pio2/src/clib/ncputgetparser.pl
M	src/externals/pio2/src/clib/pio.h
D	src/externals/pio2/src/clib/pio_c_get_template.c
D	src/externals/pio2/src/clib/pio_c_put_template.c
D	src/externals/pio2/src/clib/pio_c_template.c
M	src/externals/pio2/src/clib/pio_darray.c
A	src/externals/pio2/src/clib/pio_darray_int.c
M	src/externals/pio2/src/clib/pio_file.c
M	src/externals/pio2/src/clib/pio_get_nc.c
A	src/externals/pio2/src/clib/pio_getput_int.c
M	src/externals/pio2/src/clib/pio_internal.h
M	src/externals/pio2/src/clib/pio_lists.c
A	src/externals/pio2/src/clib/pio_msg.c
M	src/externals/pio2/src/clib/pio_nc.c
M	src/externals/pio2/src/clib/pio_nc4.c
M	src/externals/pio2/src/clib/pio_put_nc.c
M	src/externals/pio2/src/clib/pio_rearrange.c
M	src/externals/pio2/src/clib/pio_spmd.c
A	src/externals/pio2/src/clib/pio_varm.c
M	src/externals/pio2/src/clib/pioc.c
M	src/externals/pio2/src/clib/pioc_sc.c
M	src/externals/pio2/src/clib/pioc_support.c
M	src/externals/pio2/src/clib/topology.c
M	src/externals/pio2/src/flib/CMakeLists.txt
M	src/externals/pio2/src/flib/pio.F90
M	src/externals/pio2/src/flib/pio_nf.F90
M	src/externals/pio2/src/flib/pio_types.F90
M	src/externals/pio2/src/flib/piodarray.F90.in
M	src/externals/pio2/src/flib/piolib_mod.F90
M	src/externals/pio2/src/flib/pionfatt_mod.F90.in
M	src/externals/pio2/src/flib/pionfget_mod.F90.in
M	src/externals/pio2/src/flib/pionfput_mod.F90.in
M	src/externals/pio2/src/gptl/CMakeLists.txt
M	src/externals/pio2/src/gptl/gptl.c
M	src/externals/pio2/src/gptl/perf_mod.F90
M	src/externals/pio2/tests/CMakeLists.txt
A	src/externals/pio2/tests/cunit/CMakeLists.txt
A	src/externals/pio2/tests/cunit/pio_tests.h
A	src/externals/pio2/tests/cunit/test_async_2comp.c
A	src/externals/pio2/tests/cunit/test_async_3proc.c
A	src/externals/pio2/tests/cunit/test_async_4proc.c
A	src/externals/pio2/tests/cunit/test_async_simple.c
A	src/externals/pio2/tests/cunit/test_common.c
A	src/externals/pio2/tests/cunit/test_darray.c
A	src/externals/pio2/tests/cunit/test_darray_1d.c
A	src/externals/pio2/tests/cunit/test_darray_3d.c
A	src/externals/pio2/tests/cunit/test_darray_multivar.c
A	src/externals/pio2/tests/cunit/test_decomps.c
A	src/externals/pio2/tests/cunit/test_intercomm2.c
A	src/externals/pio2/tests/cunit/test_iosystem2.c
A	src/externals/pio2/tests/cunit/test_iosystem2_simple.c
A	src/externals/pio2/tests/cunit/test_iosystem2_simple2.c
A	src/externals/pio2/tests/cunit/test_iosystem3.c
A	src/externals/pio2/tests/cunit/test_iosystem3_simple.c
A	src/externals/pio2/tests/cunit/test_iosystem3_simple2.c
A	src/externals/pio2/tests/cunit/test_pioc.c
A	src/externals/pio2/tests/cunit/test_pioc_fill.c
A	src/externals/pio2/tests/cunit/test_pioc_putget.c
A	src/externals/pio2/tests/cunit/test_pioc_unlim.c
A	src/externals/pio2/tests/cunit/test_shared.c
A	src/externals/pio2/tests/cunit/test_spmd.c
M	src/externals/pio2/tests/general/CMakeLists.txt
A	src/externals/pio2/tests/general/README.md
M	src/externals/pio2/tests/general/ncdf_fail.F90.in
M	src/externals/pio2/tests/general/ncdf_get_put.F90.in
A	src/externals/pio2/tests/general/ncdf_inq.F90.in
D	src/externals/pio2/tests/general/pio_decomp_fillval2.F90
A	src/externals/pio2/tests/general/pio_decomp_frame_tests.F90.in
M	src/externals/pio2/tests/general/pio_decomp_tests.F90.in
A	src/externals/pio2/tests/general/pio_decomp_tests_1d.F90.in
A	src/externals/pio2/tests/general/pio_decomp_tests_2d.F90.in
A	src/externals/pio2/tests/general/pio_decomp_tests_3d.F90.in
M	src/externals/pio2/tests/general/pio_file_simple_tests.F90.in
A	src/externals/pio2/tests/general/pio_iosystem_tests.F90.in
A	src/externals/pio2/tests/general/pio_iosystem_tests2.F90.in
A	src/externals/pio2/tests/general/pio_iosystem_tests3.F90.in
A	src/externals/pio2/tests/general/pio_rearr.F90.in
A	src/externals/pio2/tests/general/pio_rearr_opts.F90.in
A	src/externals/pio2/tests/general/pio_rearr_opts2.F90.in
M	src/externals/pio2/tests/general/test_memleak.c
M	src/externals/pio2/tests/general/util/pio_tf_f90gen.pl
M	src/externals/pio2/tests/general/util/pio_tutil.F90
M	src/externals/pio2/tests/performance/CMakeLists.txt
M	src/externals/pio2/tests/unit/CMakeLists.txt
D	src/externals/pio2/tests/unit/README
M	src/externals/pio2/tests/unit/basic_tests.F90
M	src/externals/pio2/tests/unit/driver.F90
M	src/externals/pio2/tests/unit/global_vars.F90
M	src/externals/pio2/tests/unit/nc_set_log_level2.c
M	src/externals/pio2/tests/unit/ncdf_tests.F90
D	src/externals/pio2/tests/unit/test_names.c
D	src/externals/pio2/tests/unit/test_nc4.c

======================================================================
Originator: Chris Fischer
Date: 3-7-2017
Tag: cime5.3.0-alpha.02
Answer Changes: None
Tests:
Dependencies:

Brief Summary:  Revert PR# 1210, remove hardcoded compclasses

User interface changes:

PR summary: git log --oneline --first-parent [previous_tag]..master
   4cc7e22 Merge pull request #1213 from ESMCI/revert-1210-compclasses_cleanup

Modified files: git diff --name-status [previous_tag]
M       scripts/lib/CIME/SystemTests/ncr.py
M       scripts/lib/CIME/SystemTests/pem.py
M       scripts/lib/CIME/SystemTests/pet.py
M       scripts/lib/CIME/get_timing.py

======================================================================

Originator: Chris Fischer
Date: 3-6-2017
Tag: cime5.3.0-alpha.01
Answer Changes: None
Tests: code_checker,hist_utils.py,scripts_regression_tests.py, on
       different PRs..
Dependencies:

Brief Summary:
   - Adjust pio layout if pe layout is changed.
   - Make baseline perms setting more robust.
   - Allows user to rm -rf their build area and rebuild without having
     to re-run case.setup.
   - Big refactor of CaseStatus management.
   - cdf64 only valid for serial netcdf, fix seq test
   - Fix bug in ERP namelist comparison.
   - Refactor env_batch
   - fix issue with compset not printing to timing file
   - copy rather than follow links in create_clone
   - update compare_xml to find more differences
   - remove hardcoded compclasses

User interface changes:
   - case.setup has a new option --no-adjust-pio
   - case.build behavior slightly different case.build behavior slightly
     different
   - CaseStatus will look slightly different
   - env_batch.xml now looks different

PR summary: git log --oneline --first-parent [previous_tag]..master
3fd75db Merge pull request #1210 from jedwards4b/compclasses_cleanup
78cab9a Merge pull request #1207 from jedwards4b/fix_compare_xml
bd0f19d Merge pull request #1209 from jedwards4b/symlinks_in_clone
d308873 Merge pull request #1208 from jedwards4b/fix_compset_not_in_timing
77dc910 Merge pull request #1204 from ESMCI/jgfouca/refactor_env_batch
c10fe46 Merge pull request #1203 from ESMCI/jgfouca/fix_erp_namelist_issue
30e8e79 Merge pull request #1200 from jedwards4b/seq_test_fix
5eee02a Merge pull request #1199 from ESMCI/jgfouca/refactor_case_status
4219bfd Merge pull request #1196 from ESMCI/jgfouca/build_needs_to_make_dirs
33ac01a Merge pull request #1197 from ESMCI/jgfouca/minor_hist_chg
7e7f805 Merge pull request #1195 from jedwards4b/pio_layout_adjust
0131a12 resolve merge conflicts
6c93fc3 Merge branch 'agsalin/mkdir_src'
215e459 Merge pull request #1182 from jedwards4b/config_archive_split


Modified files: git diff --name-status [previous_tag]
M	CMakeLists.txt
M	ChangeLog
D	cime_config/acme/allactive/config_compsets.xml
D	cime_config/acme/allactive/config_compsets.xml.cime2
D	cime_config/acme/allactive/config_pes.xml
D	cime_config/acme/allactive/config_pes.xml.cime2
D	cime_config/acme/allactive/config_pesall.xml
D	cime_config/acme/allactive/testlist_allactive.xml
D	cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/shell_commands
D	cime_config/acme/allactive/testmods_dirs/force_netcdf_pio/shell_commands
D	cime_config/acme/allactive/usermods_dirs/b1850/shell_commands
D	cime_config/acme/allactive/usermods_dirs/b1850_cism/include_user_mods
D	cime_config/acme/allactive/usermods_dirs/b1850_cism/user_nl_cism
D	cime_config/acme/config_archive.xml
D	cime_config/acme/config_files.xml
D	cime_config/acme/config_grids.xml
D	cime_config/acme/machines/Depends.cetus
D	cime_config/acme/machines/Depends.corip1
D	cime_config/acme/machines/Depends.cray
D	cime_config/acme/machines/Depends.gnu
D	cime_config/acme/machines/Depends.intel
D	cime_config/acme/machines/Depends.intel14
D	cime_config/acme/machines/Depends.intelmic
D	cime_config/acme/machines/Depends.intelmic14
D	cime_config/acme/machines/Depends.mira
D	cime_config/acme/machines/Depends.nag
D	cime_config/acme/machines/Depends.titan.cray
D	cime_config/acme/machines/Depends.titan.intel
D	cime_config/acme/machines/Depends.titan.pgi
D	cime_config/acme/machines/Depends.titan.pgiacc
D	cime_config/acme/machines/Makefile
D	cime_config/acme/machines/README
D	cime_config/acme/machines/config_batch.xml
D	cime_config/acme/machines/config_batch.xsd
D	cime_config/acme/machines/config_compilers.xml
D	cime_config/acme/machines/config_lt_archive.xml
D	cime_config/acme/machines/config_machines.xml
D	cime_config/acme/machines/config_pio.xml
D	cime_config/acme/machines/mkDepends
D	cime_config/acme/machines/mkSrcfiles
D	cime_config/acme/machines/syslog.cetus
D	cime_config/acme/machines/syslog.cori-haswell
D	cime_config/acme/machines/syslog.cori-knl
D	cime_config/acme/machines/syslog.edison
D	cime_config/acme/machines/syslog.mira
D	cime_config/acme/machines/syslog.noop
D	cime_config/acme/machines/syslog.titan
D	cime_config/acme/machines/template.case.run
D	cime_config/acme/machines/template.case.test
D	cime_config/acme/machines/template.lt_archive
D	cime_config/acme/machines/template.ocn_diagnostics
D	cime_config/acme/machines/template.st_archive
D	cime_config/acme/machines/template.timeseries
D	cime_config/acme/machines/userdefined_laptop_template/README.md
D	cime_config/acme/machines/userdefined_laptop_template/config_compilers.xml
D	cime_config/acme/machines/userdefined_laptop_template/config_machines.xml
D	cime_config/acme/machines/userdefined_laptop_template/config_pes.xml
D	cime_config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
D	cime_config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
D	cime_config/buildlib.csm_share
D	cime_config/buildlib.gptl
D	cime_config/buildlib.mct
D	cime_config/buildlib.mpi-serial
D	cime_config/buildlib.pio
D	cime_config/cesm/config_archive.xml
D	cime_config/cesm/config_files.xml
D	cime_config/cesm/config_grids.xml
D	cime_config/cesm/machines/Depends.babbageKnc
D	cime_config/cesm/machines/Depends.bluewaters
D	cime_config/cesm/machines/Depends.corip1
D	cime_config/cesm/machines/Depends.cray
D	cime_config/cesm/machines/Depends.gnu
D	cime_config/cesm/machines/Depends.goldbach
D	cime_config/cesm/machines/Depends.intel
D	cime_config/cesm/machines/Depends.intel14
D	cime_config/cesm/machines/Depends.intelmic
D	cime_config/cesm/machines/Depends.intelmic14
D	cime_config/cesm/machines/Depends.mira
D	cime_config/cesm/machines/Depends.nag
D	cime_config/cesm/machines/Makefile
D	cime_config/cesm/machines/README
D	cime_config/cesm/machines/config_batch.xml
D	cime_config/cesm/machines/config_compilers.xml
D	cime_config/cesm/machines/config_lt_archive.xml
D	cime_config/cesm/machines/config_machines.xml
D	cime_config/cesm/machines/config_pio.xml
D	cime_config/cesm/machines/mkDepends
D	cime_config/cesm/machines/mkSrcfiles
D	cime_config/cesm/machines/nag_mpi_argument.txt
D	cime_config/cesm/machines/template.case.run
D	cime_config/cesm/machines/template.case.test
D	cime_config/cesm/machines/template.lt_archive
D	cime_config/cesm/machines/template.st_archive
D	cime_config/cesm/machines/userdefined_laptop_template/README.md
D	cime_config/cesm/machines/userdefined_laptop_template/config_compilers.xml
D	cime_config/cesm/machines/userdefined_laptop_template/config_machines.xml
D	cime_config/cesm/machines/userdefined_laptop_template/config_pes.xml
D	cime_config/config_headers.xml
D	cime_config/config_tests.xml
D	cime_config/xml_schemas/archive.xsd
D	cime_config/xml_schemas/cimeteststatus.xsd
D	cime_config/xml_schemas/config_batch.xsd
D	cime_config/xml_schemas/config_compilers_v2.xsd
D	cime_config/xml_schemas/config_compsets.xsd
D	cime_config/xml_schemas/config_grids_v2.xsd
D	cime_config/xml_schemas/config_machines.xsd
D	cime_config/xml_schemas/config_machines_template.xml
D	cime_config/xml_schemas/config_pes.xsd
D	cime_config/xml_schemas/entry_id.xsd
D	cime_config/xml_schemas/entry_id_base.xsd
D	cime_config/xml_schemas/entry_id_namelist.xsd
D	cime_config/xml_schemas/testlist.xsd
D	components/data_comps/datm/atm_comp_mct.F90
D	components/data_comps/datm/cime_config/buildlib
D	components/data_comps/datm/cime_config/buildnml
D	components/data_comps/datm/cime_config/config_component.xml
D	components/data_comps/datm/cime_config/namelist_definition_datm.xml
D	components/data_comps/datm/cime_config/user_nl_datm
D	components/data_comps/datm/datm_comp_mod.F90
D	components/data_comps/datm/datm_shr_mod.F90
D	components/data_comps/datm/doc/SOM.pdf
D	components/data_comps/datm/doc/bookinfo.xml
D	components/data_comps/datm/doc/datacomps.xml
D	components/data_comps/datm/doc/intro.xml
D	components/data_comps/datm/doc/rundocbook.csh
D	components/data_comps/datm/doc/streams.xml
D	components/data_comps/datm/doc/ug.xml
D	components/data_comps/desp/cime_config/buildlib
D	components/data_comps/desp/cime_config/buildnml
D	components/data_comps/desp/cime_config/config_component.xml
D	components/data_comps/desp/cime_config/namelist_definition_desp.xml
D	components/data_comps/desp/cime_config/user_nl_desp
D	components/data_comps/desp/desp_comp_mod.F90
D	components/data_comps/desp/esp_comp_mct.F90
D	components/data_comps/desp/esp_utils.F90
D	components/data_comps/dice/cime_config/buildlib
D	components/data_comps/dice/cime_config/buildnml
D	components/data_comps/dice/cime_config/config_component.xml
D	components/data_comps/dice/cime_config/namelist_definition_dice.xml
D	components/data_comps/dice/cime_config/user_nl_dice
D	components/data_comps/dice/dice_comp_mod.F90
D	components/data_comps/dice/ice_comp_mct.F90
D	components/data_comps/dlnd/cime_config/buildlib
D	components/data_comps/dlnd/cime_config/buildnml
D	components/data_comps/dlnd/cime_config/config_component.xml
D	components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
D	components/data_comps/dlnd/cime_config/user_nl_dlnd
D	components/data_comps/dlnd/dlnd_comp_mod.F90
D	components/data_comps/dlnd/lnd_comp_mct.F90
D	components/data_comps/docn/cime_config/buildlib
D	components/data_comps/docn/cime_config/buildnml
D	components/data_comps/docn/cime_config/config_component.xml
D	components/data_comps/docn/cime_config/namelist_definition_docn.xml
D	components/data_comps/docn/cime_config/user_nl_docn
D	components/data_comps/docn/docn_comp_mod.F90
D	components/data_comps/docn/ocn_comp_mct.F90
D	components/data_comps/docn/tools/pop_som_frc/README
D	components/data_comps/docn/tools/pop_som_frc/SOM.doc
D	components/data_comps/docn/tools/pop_som_frc/SOM.pdf
D	components/data_comps/docn/tools/pop_som_frc/pop_frc.csh
D	components/data_comps/docn/tools/pop_som_frc/pop_frc_mlann.ncl
D	components/data_comps/docn/tools/pop_som_frc/pop_frc_mlt.ncl
D	components/data_comps/docn/tools/pop_som_frc/pop_interp.ncl
D	components/data_comps/docn/tools/pop_som_frc/read_from_mss.csh
D	components/data_comps/docn/tools/pop_som_frc/read_from_mss_month.csh
D	components/data_comps/drof/cime_config/buildlib
D	components/data_comps/drof/cime_config/buildnml
D	components/data_comps/drof/cime_config/config_component.xml
D	components/data_comps/drof/cime_config/namelist_definition_drof.xml
D	components/data_comps/drof/cime_config/user_nl_drof
D	components/data_comps/drof/drof_comp_mod.F90
D	components/data_comps/drof/rof_comp_mct.F90
D	components/data_comps/dwav/README
D	components/data_comps/dwav/bld/README
D	components/data_comps/dwav/cime_config/buildlib
D	components/data_comps/dwav/cime_config/buildnml
D	components/data_comps/dwav/cime_config/config_component.xml
D	components/data_comps/dwav/cime_config/namelist_definition_dwav.xml
D	components/data_comps/dwav/cime_config/user_nl_dwav
D	components/data_comps/dwav/dwav_comp_mod.F90
D	components/data_comps/dwav/wav_comp_mct.F90
D	components/stub_comps/satm/cime_config/buildlib
D	components/stub_comps/satm/cime_config/buildnml
D	components/stub_comps/satm/cime_config/config_component.xml
D	components/stub_comps/satm/cpl/atm_comp_mct.F90
D	components/stub_comps/sesp/cime_config/buildlib
D	components/stub_comps/sesp/cime_config/buildnml
D	components/stub_comps/sesp/cime_config/config_component.xml
D	components/stub_comps/sesp/cpl/esp_comp_mct.F90
D	components/stub_comps/sglc/cime_config/buildlib
D	components/stub_comps/sglc/cime_config/buildnml
D	components/stub_comps/sglc/cime_config/config_component.xml
D	components/stub_comps/sglc/cpl/glc_comp_mct.F90
D	components/stub_comps/sice/cime_config/buildlib
D	components/stub_comps/sice/cime_config/buildnml
D	components/stub_comps/sice/cime_config/config_component.xml
D	components/stub_comps/sice/cpl/ice_comp_mct.F90
D	components/stub_comps/slnd/cime_config/buildlib
D	components/stub_comps/slnd/cime_config/buildnml
D	components/stub_comps/slnd/cime_config/config_component.xml
D	components/stub_comps/slnd/cpl/lnd_comp_mct.F90
D	components/stub_comps/socn/cime_config/buildlib
D	components/stub_comps/socn/cime_config/buildnml
D	components/stub_comps/socn/cime_config/config_component.xml
D	components/stub_comps/socn/cpl/ocn_comp_mct.F90
D	components/stub_comps/srof/cime_config/buildlib
D	components/stub_comps/srof/cime_config/buildnml
D	components/stub_comps/srof/cime_config/config_component.xml
D	components/stub_comps/srof/cpl/rof_comp_mct.F90
D	components/stub_comps/swav/cime_config/buildlib
D	components/stub_comps/swav/cime_config/buildnml
D	components/stub_comps/swav/cime_config/config_component.xml
D	components/stub_comps/swav/cpl/wav_comp_mct.F90
D	components/xcpl_comps/xatm/cime_config/buildlib
D	components/xcpl_comps/xatm/cime_config/buildnml
D	components/xcpl_comps/xatm/cime_config/config_component.xml
D	components/xcpl_comps/xatm/cpl/atm_comp_mct.F90
D	components/xcpl_comps/xglc/cime_config/buildlib
D	components/xcpl_comps/xglc/cime_config/buildnml
D	components/xcpl_comps/xglc/cime_config/config_component.xml
D	components/xcpl_comps/xglc/cpl/glc_comp_mct.F90
D	components/xcpl_comps/xice/cime_config/buildlib
D	components/xcpl_comps/xice/cime_config/buildnml
D	components/xcpl_comps/xice/cime_config/config_component.xml
D	components/xcpl_comps/xice/cpl/ice_comp_mct.F90
D	components/xcpl_comps/xlnd/cime_config/buildlib
D	components/xcpl_comps/xlnd/cime_config/buildnml
D	components/xcpl_comps/xlnd/cime_config/config_component.xml
D	components/xcpl_comps/xlnd/cpl/lnd_comp_mct.F90
D	components/xcpl_comps/xocn/cime_config/buildlib
D	components/xcpl_comps/xocn/cime_config/buildnml
D	components/xcpl_comps/xocn/cime_config/config_component.xml
D	components/xcpl_comps/xocn/cpl/ocn_comp_mct.F90
D	components/xcpl_comps/xrof/cime_config/buildlib
D	components/xcpl_comps/xrof/cime_config/buildnml
D	components/xcpl_comps/xrof/cime_config/config_component.xml
D	components/xcpl_comps/xrof/cpl/rof_comp_mct.F90
D	components/xcpl_comps/xshare/dead_data_mod.F90
D	components/xcpl_comps/xshare/dead_mct_mod.F90
D	components/xcpl_comps/xshare/dead_mod.F90
D	components/xcpl_comps/xwav/cime_config/buildlib
D	components/xcpl_comps/xwav/cime_config/buildnml
D	components/xcpl_comps/xwav/cime_config/config_component.xml
D	components/xcpl_comps/xwav/cpl/wav_comp_mct.F90
A	config/acme/allactive/config_compsets.xml
A	config/acme/allactive/config_compsets.xml.cime2
A	config/acme/allactive/config_pes.xml
A	config/acme/allactive/config_pes.xml.cime2
A	config/acme/allactive/config_pesall.xml
A	config/acme/allactive/testlist_allactive.xml
A	config/acme/allactive/testmods_dirs/cam/outfrq9s/shell_commands
A	config/acme/allactive/testmods_dirs/force_netcdf_pio/shell_commands
A	config/acme/allactive/usermods_dirs/b1850/shell_commands
A	config/acme/allactive/usermods_dirs/b1850_cism/include_user_mods
A	config/acme/allactive/usermods_dirs/b1850_cism/user_nl_cism
A	config/acme/config_archive.xml
A	config/acme/config_files.xml
A	config/acme/config_grids.xml
A	config/acme/machines/Depends.cetus
A	config/acme/machines/Depends.corip1
A	config/acme/machines/Depends.cray
A	config/acme/machines/Depends.gnu
A	config/acme/machines/Depends.intel
A	config/acme/machines/Depends.intel14
A	config/acme/machines/Depends.intelmic
A	config/acme/machines/Depends.intelmic14
A	config/acme/machines/Depends.mira
A	config/acme/machines/Depends.nag
A	config/acme/machines/Depends.titan.cray
A	config/acme/machines/Depends.titan.intel
A	config/acme/machines/Depends.titan.pgi
A	config/acme/machines/Depends.titan.pgiacc
A	config/acme/machines/Makefile
A	config/acme/machines/README
A	config/acme/machines/config_batch.xml
A	config/acme/machines/config_batch.xsd
A	config/acme/machines/config_compilers.xml
A	config/acme/machines/config_lt_archive.xml
A	config/acme/machines/config_machines.xml
A	config/acme/machines/config_pio.xml
A	config/acme/machines/mkDepends
A	config/acme/machines/mkSrcfiles
A	config/acme/machines/syslog.cetus
A	config/acme/machines/syslog.cori-haswell
A	config/acme/machines/syslog.cori-knl
A	config/acme/machines/syslog.edison
A	config/acme/machines/syslog.mira
A	config/acme/machines/syslog.noop
A	config/acme/machines/syslog.titan
A	config/acme/machines/template.case.run
A	config/acme/machines/template.case.test
A	config/acme/machines/template.lt_archive
A	config/acme/machines/template.ocn_diagnostics
A	config/acme/machines/template.st_archive
A	config/acme/machines/template.timeseries
A	config/acme/machines/userdefined_laptop_template/README.md
A	config/acme/machines/userdefined_laptop_template/config_compilers.xml
A	config/acme/machines/userdefined_laptop_template/config_machines.xml
A	config/acme/machines/userdefined_laptop_template/config_pes.xml
A	config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
A	config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
A	config/cesm/config_archive.xml
A	config/cesm/config_files.xml
A	config/cesm/config_grids.xml
A	config/cesm/machines/Depends.babbageKnc
A	config/cesm/machines/Depends.bluewaters
A	config/cesm/machines/Depends.corip1
A	config/cesm/machines/Depends.cray
A	config/cesm/machines/Depends.gnu
A	config/cesm/machines/Depends.goldbach
A	config/cesm/machines/Depends.intel
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A	config/cesm/machines/Depends.intelmic14
A	config/cesm/machines/Depends.mira
A	config/cesm/machines/Depends.nag
A	config/cesm/machines/Makefile
A	config/cesm/machines/README
A	config/cesm/machines/config_batch.xml
A	config/cesm/machines/config_compilers.xml
A	config/cesm/machines/config_lt_archive.xml
A	config/cesm/machines/config_machines.xml
A	config/cesm/machines/config_pio.xml
A	config/cesm/machines/mkDepends
A	config/cesm/machines/mkSrcfiles
A	config/cesm/machines/nag_mpi_argument.txt
A	config/cesm/machines/template.case.run
A	config/cesm/machines/template.case.test
A	config/cesm/machines/template.lt_archive
A	config/cesm/machines/template.st_archive
A	config/cesm/machines/userdefined_laptop_template/README.md
A	config/cesm/machines/userdefined_laptop_template/config_compilers.xml
A	config/cesm/machines/userdefined_laptop_template/config_machines.xml
A	config/cesm/machines/userdefined_laptop_template/config_pes.xml
A	config/config_headers.xml
A	config/config_tests.xml
A	config/xml_schemas/cimeteststatus.xsd
A	config/xml_schemas/config_archive.xsd
A	config/xml_schemas/config_batch.xsd
A	config/xml_schemas/config_compilers_v2.xsd
A	config/xml_schemas/config_compsets.xsd
A	config/xml_schemas/config_grids_v2.xsd
A	config/xml_schemas/config_machines.xsd
A	config/xml_schemas/config_machines_template.xml
A	config/xml_schemas/config_pes.xsd
A	config/xml_schemas/entry_id.xsd
A	config/xml_schemas/entry_id_base.xsd
A	config/xml_schemas/entry_id_namelist.xsd
A	config/xml_schemas/env_archive.xsd
A	config/xml_schemas/env_entry_id.xsd
A	config/xml_schemas/testlist.xsd
D	driver_cpl/bld/namelist_files/namelist_defaults_drv.xml
D	driver_cpl/bld/namelist_files/namelist_definition_drv.xml
D	driver_cpl/bld/namelist_files/namelist_definition_drv_flds.xml
D	driver_cpl/bld/namelist_files/namelist_definition_modio.xml
D	driver_cpl/bld/testdir/Buildconf/camconf/drv_flds_in
D	driver_cpl/bld/testdir/Buildconf/clmconf/drv_flds_in
D	driver_cpl/bld/testdir/env_build.xml
D	driver_cpl/bld/testdir/env_case.xml
D	driver_cpl/bld/testdir/env_mach_pes.xml
D	driver_cpl/bld/testdir/env_run.xml
D	driver_cpl/bld/testdir/runtest
D	driver_cpl/bld/testdir/user_nl_cpl
D	driver_cpl/cime_config/buildexe
D	driver_cpl/cime_config/buildnml
D	driver_cpl/cime_config/config_component.xml
D	driver_cpl/cime_config/config_component_acme.xml
D	driver_cpl/cime_config/config_component_cesm.xml
D	driver_cpl/cime_config/config_compsets.xml
D	driver_cpl/cime_config/config_pes.xml
D	driver_cpl/cime_config/namelist_definition_drv.xml
D	driver_cpl/cime_config/namelist_definition_modelio.xml
D	driver_cpl/cime_config/testdefs/testlist_drv.xml
D	driver_cpl/cime_config/testdefs/testmods_dirs/drv/5steps/shell_commands
D	driver_cpl/cime_config/user_nl_cpl
D	driver_cpl/doc/bookinfo.xml
D	driver_cpl/doc/chap1.xml
D	driver_cpl/doc/chap2.xml
D	driver_cpl/doc/figx1.jpg
D	driver_cpl/doc/namelist.xml
D	driver_cpl/doc/rundocbook.csh
D	driver_cpl/doc/stylesheet.dsl
D	driver_cpl/doc/ug.xml
D	driver_cpl/driver/CMakeLists.txt
D	driver_cpl/driver/cesm_comp_mod.F90
D	driver_cpl/driver/cesm_driver.F90
D	driver_cpl/driver/component_mod.F90
D	driver_cpl/driver/component_type_mod.F90
D	driver_cpl/driver/cplcomp_exchange_mod.F90
D	driver_cpl/driver/map_glc2lnd_mod.F90
D	driver_cpl/driver/map_lnd2glc_mod.F90
D	driver_cpl/driver/map_lnd2rof_irrig_mod.F90
D	driver_cpl/driver/mrg_mod.F90
D	driver_cpl/driver/prep_aoflux_mod.F90
D	driver_cpl/driver/prep_atm_mod.F90
D	driver_cpl/driver/prep_glc_mod.F90
D	driver_cpl/driver/prep_ice_mod.F90
D	driver_cpl/driver/prep_lnd_mod.F90
D	driver_cpl/driver/prep_ocn_mod.F90
D	driver_cpl/driver/prep_rof_mod.F90
D	driver_cpl/driver/prep_wav_mod.F90
D	driver_cpl/driver/seq_diag_mct.F90
D	driver_cpl/driver/seq_domain_mct.F90
D	driver_cpl/driver/seq_flux_mct.F90
D	driver_cpl/driver/seq_frac_mct.F90
D	driver_cpl/driver/seq_hist_mod.F90
D	driver_cpl/driver/seq_io_mod.F90
D	driver_cpl/driver/seq_map_mod.F90
D	driver_cpl/driver/seq_map_type_mod.F90
D	driver_cpl/driver/seq_rest_mod.F90
D	driver_cpl/driver/t_driver_timers_mod.F90
D	driver_cpl/driver/vertical_gradient_calculator_2nd_order.F90
D	driver_cpl/driver/vertical_gradient_calculator_base.F90
D	driver_cpl/driver/vertical_gradient_calculator_factory.F90
D	driver_cpl/shr/CMakeLists.txt
D	driver_cpl/shr/glc_elevclass_mod.F90
D	driver_cpl/shr/seq_cdata_mod.F90
D	driver_cpl/shr/seq_comm_mct.F90
D	driver_cpl/shr/seq_drydep_mod.F90
D	driver_cpl/shr/seq_flds_mod.F90
D	driver_cpl/shr/seq_infodata_mod.F90
D	driver_cpl/shr/seq_io_read_mod.F90
D	driver_cpl/shr/seq_timemgr_mod.F90
D	driver_cpl/shr/shr_carma_mod.F90
D	driver_cpl/shr/shr_expr_parser_mod.F90
D	driver_cpl/shr/shr_fire_emis_mod.F90
D	driver_cpl/shr/shr_megan_mod.F90
D	driver_cpl/unit_test/CMakeLists.txt
D	driver_cpl/unit_test/avect_wrapper_test/CMakeLists.txt
D	driver_cpl/unit_test/avect_wrapper_test/test_avect_wrapper.pf
D	driver_cpl/unit_test/glc_elevclass_test/CMakeLists.txt
D	driver_cpl/unit_test/glc_elevclass_test/test_glc_elevclass.pf
D	driver_cpl/unit_test/map_glc2lnd_test/CMakeLists.txt
D	driver_cpl/unit_test/map_glc2lnd_test/test_map_glc2lnd.pf
D	driver_cpl/unit_test/map_lnd2glc_test/CMakeLists.txt
D	driver_cpl/unit_test/map_lnd2glc_test/test_map_lnd2glc.pf
D	driver_cpl/unit_test/map_lnd2rof_irrig_test/CMakeLists.txt
D	driver_cpl/unit_test/map_lnd2rof_irrig_test/test_map_lnd2rof_irrig.pf
D	driver_cpl/unit_test/seq_map_test/CMakeLists.txt
D	driver_cpl/unit_test/seq_map_test/test_seq_map.pf
D	driver_cpl/unit_test/stubs/CMakeLists.txt
D	driver_cpl/unit_test/stubs/vertical_gradient_calculator_constant.F90
D	driver_cpl/unit_test/utils/CMakeLists.txt
D	driver_cpl/unit_test/utils/avect_wrapper_mod.F90
D	driver_cpl/unit_test/utils/create_mapper_mod.F90
D	driver_cpl/unit_test/utils/mct_wrapper_mod.F90
D	driver_cpl/unit_test/utils/simple_map_mod.F90
D	driver_cpl/unit_test/vertical_gradient_calculator_test/CMakeLists.txt
D	driver_cpl/unit_test/vertical_gradient_calculator_test/README
D	driver_cpl/unit_test/vertical_gradient_calculator_test/gradient_example.txt
D	driver_cpl/unit_test/vertical_gradient_calculator_test/plot_gradient
D	driver_cpl/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_2nd_order.pf
D	driver_cpl/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_factory.pf
D	externals/CMake/.gitignore
D	externals/CMake/CESM_utils.cmake
D	externals/CMake/CIME_utils.cmake
D	externals/CMake/ChangeLog
D	externals/CMake/Compilers.cmake
D	externals/CMake/FindpFUnit.cmake
D	externals/CMake/LICENSE
D	externals/CMake/README.md
D	externals/CMake/Sourcelist_utils.cmake
D	externals/CMake/TryCSizeOf.f90
D	externals/CMake/TryMPIIO.f90
D	externals/CMake/TryMPIMod.f90
D	externals/CMake/TryMPISERIAL.f90
D	externals/CMake/TryPnetcdf_inc.f90
D	externals/CMake/TryPnetcdf_mod.f90
D	externals/CMake/genf90_utils.cmake
D	externals/CMake/mpiexec.cmake
D	externals/CMake/pFUnit_utils.cmake
D	externals/genf90/ChangeLog
D	externals/genf90/genf90.pl
D	externals/mct/.gitignore
D	externals/mct/COPYRIGHT
D	externals/mct/Makefile
D	externals/mct/Makefile.conf.in
D	externals/mct/README
D	externals/mct/aclocal.m4
D	externals/mct/benchmarks/.gitignore
D	externals/mct/benchmarks/Makefile
D	externals/mct/benchmarks/RouterTestDis.F90
D	externals/mct/benchmarks/RouterTestOvr.F90
D	externals/mct/benchmarks/T42.8pC
D	externals/mct/benchmarks/T42.8pR
D	externals/mct/benchmarks/gx1.8pC
D	externals/mct/benchmarks/gx1.8pR
D	externals/mct/benchmarks/importBench.F90
D	externals/mct/config.h.in
D	externals/mct/configure
D	externals/mct/configure.ac
D	externals/mct/doc/.gitignore
D	externals/mct/doc/Makefile
D	externals/mct/doc/README
D	externals/mct/doc/coupler.bib
D	externals/mct/doc/mct_APIs.tex
D	externals/mct/doc/texsrc/.gitignore
D	externals/mct/doc/texsrc/Makefile
D	externals/mct/doc/texsrc/SRCS_tex.mk
D	externals/mct/examples/Makefile
D	externals/mct/examples/README
D	externals/mct/examples/climate_concur1/.gitignore
D	externals/mct/examples/climate_concur1/Makefile
D	externals/mct/examples/climate_concur1/README
D	externals/mct/examples/climate_concur1/coupler.F90
D	externals/mct/examples/climate_concur1/master.F90
D	externals/mct/examples/climate_concur1/model.F90
D	externals/mct/examples/climate_sequen1/.gitignore
D	externals/mct/examples/climate_sequen1/Makefile
D	externals/mct/examples/climate_sequen1/README
D	externals/mct/examples/climate_sequen1/TS1.dat
D	externals/mct/examples/climate_sequen1/coupler.F90
D	externals/mct/examples/climate_sequen1/dst.rc
D	externals/mct/examples/climate_sequen1/dstmodel.F90
D	externals/mct/examples/climate_sequen1/master.F90
D	externals/mct/examples/climate_sequen1/mutils.F90
D	externals/mct/examples/climate_sequen1/src.rc
D	externals/mct/examples/climate_sequen1/srcmodel.F90
D	externals/mct/examples/simple/.gitignore
D	externals/mct/examples/simple/Makefile
D	externals/mct/examples/simple/README
D	externals/mct/examples/simple/script.babyblue
D	externals/mct/examples/simple/twocmp.con.F90
D	externals/mct/examples/simple/twocmp.seq.F90
D	externals/mct/examples/simple/twocmp.seqNB.F90
D	externals/mct/examples/simple/twocmp.seqUnvn.F90
D	externals/mct/install-sh
D	externals/mct/m4/README
D	externals/mct/m4/acx_mpi.m4
D	externals/mct/m4/ax_fc_version.m4
D	externals/mct/m4/fortran.m4
D	externals/mct/mct/Makefile
D	externals/mct/mct/README
D	externals/mct/mct/m_Accumulator.F90
D	externals/mct/mct/m_AccumulatorComms.F90
D	externals/mct/mct/m_AttrVect.F90
D	externals/mct/mct/m_AttrVectComms.F90
D	externals/mct/mct/m_AttrVectReduce.F90
D	externals/mct/mct/m_ConvertMaps.F90
D	externals/mct/mct/m_ExchangeMaps.F90
D	externals/mct/mct/m_GeneralGrid.F90
D	externals/mct/mct/m_GeneralGridComms.F90
D	externals/mct/mct/m_GlobalMap.F90
D	externals/mct/mct/m_GlobalSegMap.F90
D	externals/mct/mct/m_GlobalSegMapComms.F90
D	externals/mct/mct/m_GlobalToLocal.F90
D	externals/mct/mct/m_MCTWorld.F90
D	externals/mct/mct/m_MatAttrVectMul.F90
D	externals/mct/mct/m_Merge.F90
D	externals/mct/mct/m_Navigator.F90
D	externals/mct/mct/m_Rearranger.F90
D	externals/mct/mct/m_Router.F90
D	externals/mct/mct/m_SparseMatrix.F90
D	externals/mct/mct/m_SparseMatrixComms.F90
D	externals/mct/mct/m_SparseMatrixDecomp.F90
D	externals/mct/mct/m_SparseMatrixPlus.F90
D	externals/mct/mct/m_SparseMatrixToMaps.F90
D	externals/mct/mct/m_SpatialIntegral.F90
D	externals/mct/mct/m_SpatialIntegralV.F90
D	externals/mct/mct/m_Transfer.F90
D	externals/mct/mkinstalldirs
D	externals/mct/mpeu/Makefile
D	externals/mct/mpeu/README
D	externals/mct/mpeu/assertmpeu.H
D	externals/mct/mpeu/get_zeits.c
D	externals/mct/mpeu/m_FcComms.F90
D	externals/mct/mpeu/m_FileResolv.F90
D	externals/mct/mpeu/m_Filename.F90
D	externals/mct/mpeu/m_IndexBin_char.F90
D	externals/mct/mpeu/m_IndexBin_integer.F90
D	externals/mct/mpeu/m_IndexBin_logical.F90
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D	externals/pio1/tests/testpio/CAM05.csh
D	externals/pio1/tests/testpio/CMakeLists.txt
D	externals/pio1/tests/testpio/MPASA30km.csh
D	externals/pio1/tests/testpio/MPASA60km.csh
D	externals/pio1/tests/testpio/POPB.csh
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D	externals/pio1/tests/testpio/README.testpio
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D	externals/pio1/tests/testpio/perl5lib/XML/Changes
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D	externals/pio2/doc/CMakeFiles/3.2.3/CMakeSystem.cmake
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D	externals/pio2/doc/CMakeFiles/cmake.check_cache
D	externals/pio2/doc/CMakeLists.txt
D	externals/pio2/doc/Doxyfile.in
D	externals/pio2/doc/DoxygenLayout.xml
D	externals/pio2/doc/customdoxygen.css
D	externals/pio2/doc/doxygen.sty
D	externals/pio2/doc/images/baseimage.graffle
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D	externals/pio2/doc/source/CAMexample.txt
D	externals/pio2/doc/source/Decomp.txt
D	externals/pio2/doc/source/Error.txt
D	externals/pio2/doc/source/Examples.txt
D	externals/pio2/doc/source/GettingStarted.txt
D	externals/pio2/doc/source/Installing.txt
D	externals/pio2/doc/source/api.txt
D	externals/pio2/doc/source/base.txt
D	externals/pio2/doc/source/example/errorhandle
D	externals/pio2/doc/source/example/simple-bc
D	externals/pio2/doc/source/example/simple-bc-rearr
D	externals/pio2/doc/source/example/simple-bc-rearr-pe1
D	externals/pio2/doc/source/example/simple-bc-rearr-pe2
D	externals/pio2/doc/source/example/simple-dof
D	externals/pio2/doc/source/example/simple-dof-rearr
D	externals/pio2/doc/source/faq.txt
D	externals/pio2/doc/source/mach_walkthrough.txt
D	externals/pio2/doc/source/testpio_example.txt
D	externals/pio2/examples/CMakeLists.txt
D	externals/pio2/examples/basic/CAM05.csh
D	externals/pio2/examples/basic/CMakeLists.txt
D	externals/pio2/examples/basic/MPASA30km.csh
D	externals/pio2/examples/basic/MPASA60km.csh
D	externals/pio2/examples/basic/POPB.csh
D	externals/pio2/examples/basic/POPC.csh
D	externals/pio2/examples/basic/POPD.csh
D	externals/pio2/examples/basic/POPDv0.csh
D	externals/pio2/examples/basic/POPDv1.csh
D	externals/pio2/examples/basic/POPDv2.csh
D	externals/pio2/examples/basic/POPDv3.csh
D	externals/pio2/examples/basic/POPDv4.csh
D	externals/pio2/examples/basic/POPDv5.csh
D	externals/pio2/examples/basic/README.testpio
D	externals/pio2/examples/basic/WRFB.csh
D	externals/pio2/examples/basic/alloc_mod.F90.in
D	externals/pio2/examples/basic/build_defaults.xml
D	externals/pio2/examples/basic/check_mod.F90
D	externals/pio2/examples/basic/config_bench.xml
D	externals/pio2/examples/basic/fdepends.awk
D	externals/pio2/examples/basic/gdecomp_mod.F90
D	externals/pio2/examples/basic/kinds_mod.F90
D	externals/pio2/examples/basic/kraken.128.csh
D	externals/pio2/examples/basic/kraken.1K.csh
D	externals/pio2/examples/basic/kraken.256.csh
D	externals/pio2/examples/basic/kraken.512.csh
D	externals/pio2/examples/basic/kraken.64.csh
D	externals/pio2/examples/basic/namelist_mod.F90
D	externals/pio2/examples/basic/namelists/testpio_in.apb05
D	externals/pio2/examples/basic/namelists/testpio_in.asb01
D	externals/pio2/examples/basic/namelists/testpio_in.asb04
D	externals/pio2/examples/basic/namelists/testpio_in.n4b01
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D	externals/pio2/examples/basic/namelists/testpio_in.n4b08
D	externals/pio2/examples/basic/namelists/testpio_in.n4n01
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D	externals/pio2/examples/basic/namelists/testpio_in.pb08
D	externals/pio2/examples/basic/namelists/testpio_in.pn01
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D	externals/pio2/examples/basic/namelists/testpio_in.pn03
D	externals/pio2/examples/basic/namelists/testpio_in.ps01
D	externals/pio2/examples/basic/namelists/testpio_in.ps02
D	externals/pio2/examples/basic/namelists/testpio_in.ps03
D	externals/pio2/examples/basic/namelists/testpio_in.ps04
D	externals/pio2/examples/basic/namelists/testpio_in.ps05
D	externals/pio2/examples/basic/namelists/testpio_in.ps06
D	externals/pio2/examples/basic/namelists/testpio_in.ps07
D	externals/pio2/examples/basic/namelists/testpio_in.ps08
D	externals/pio2/examples/basic/namelists/testpio_in.sb01
D	externals/pio2/examples/basic/namelists/testpio_in.sb02
D	externals/pio2/examples/basic/namelists/testpio_in.sb03
D	externals/pio2/examples/basic/namelists/testpio_in.sb04
D	externals/pio2/examples/basic/namelists/testpio_in.sb05
D	externals/pio2/examples/basic/namelists/testpio_in.sb06
D	externals/pio2/examples/basic/namelists/testpio_in.sb07
D	externals/pio2/examples/basic/namelists/testpio_in.sb08
D	externals/pio2/examples/basic/namelists/testpio_in.sn01
D	externals/pio2/examples/basic/namelists/testpio_in.sn02
D	externals/pio2/examples/basic/namelists/testpio_in.sn03
D	externals/pio2/examples/basic/namelists/testpio_in.wr01
D	externals/pio2/examples/basic/namelists/testpio_in.wr02
D	externals/pio2/examples/basic/perl5lib/ChangeLog
D	externals/pio2/examples/basic/perl5lib/README
D	externals/pio2/examples/basic/perl5lib/XML/Changes
D	externals/pio2/examples/basic/perl5lib/XML/Lite.pm
D	externals/pio2/examples/basic/perl5lib/XML/Lite/Element.pm
D	externals/pio2/examples/basic/perl5lib/XML/README
D	externals/pio2/examples/basic/perl5lib/XML/man3/XML::Lite.3
D	externals/pio2/examples/basic/perl5lib/XML/man3/XML::Lite::Element.3
D	externals/pio2/examples/basic/test.csh
D	externals/pio2/examples/basic/testdecomp.F90
D	externals/pio2/examples/basic/testdecomp.bluefire.run
D	externals/pio2/examples/basic/testdecomp_in
D	externals/pio2/examples/basic/testpio.F90
D	externals/pio2/examples/basic/testpio_bench.pl
D	externals/pio2/examples/basic/testpio_build.pl
D	externals/pio2/examples/basic/testpio_run.pl
D	externals/pio2/examples/basic/utils_mod.F90
D	externals/pio2/examples/basic/wstest.c
D	externals/pio2/examples/basic/ystest.sh
D	externals/pio2/examples/c/CMakeLists.txt
D	externals/pio2/examples/c/example1.c
D	externals/pio2/examples/c/example2.c
D	externals/pio2/examples/c/examplePio.c
D	externals/pio2/examples/cxx/CMakeLists.txt
D	externals/pio2/examples/cxx/examplePio.cxx
D	externals/pio2/examples/f03/CMakeLists.txt
D	externals/pio2/examples/f03/examplePio.f90
D	externals/pio2/scripts/prune_decomps.pl
D	externals/pio2/src/CMakeLists.txt
D	externals/pio2/src/clib/CMakeLists.txt
D	externals/pio2/src/clib/bget.c
D	externals/pio2/src/clib/bget.h
D	externals/pio2/src/clib/config.h.in
D	externals/pio2/src/clib/dtypes.h
D	externals/pio2/src/clib/ncparser.pl
D	externals/pio2/src/clib/ncputgetparser.pl
D	externals/pio2/src/clib/pio.h
D	externals/pio2/src/clib/pio_c_get_template.c
D	externals/pio2/src/clib/pio_c_put_template.c
D	externals/pio2/src/clib/pio_c_template.c
D	externals/pio2/src/clib/pio_darray.c
D	externals/pio2/src/clib/pio_file.c
D	externals/pio2/src/clib/pio_get_nc.c
D	externals/pio2/src/clib/pio_internal.h
D	externals/pio2/src/clib/pio_lists.c
D	externals/pio2/src/clib/pio_nc.c
D	externals/pio2/src/clib/pio_nc4.c
D	externals/pio2/src/clib/pio_put_nc.c
D	externals/pio2/src/clib/pio_rearrange.c
D	externals/pio2/src/clib/pio_spmd.c
D	externals/pio2/src/clib/pioc.c
D	externals/pio2/src/clib/pioc_sc.c
D	externals/pio2/src/clib/pioc_support.c
D	externals/pio2/src/clib/topology.c
D	externals/pio2/src/flib/CMakeLists.txt
D	externals/pio2/src/flib/pio.F90
D	externals/pio2/src/flib/pio_kinds.F90
D	externals/pio2/src/flib/pio_nf.F90
D	externals/pio2/src/flib/pio_support.F90
D	externals/pio2/src/flib/pio_types.F90
D	externals/pio2/src/flib/piodarray.F90.in
D	externals/pio2/src/flib/piolib_mod.F90
D	externals/pio2/src/flib/pionfatt_mod.F90.in
D	externals/pio2/src/flib/pionfget_mod.F90.in
D	externals/pio2/src/flib/pionfput_mod.F90.in
D	externals/pio2/src/gptl/CMakeLists.txt
D	externals/pio2/src/gptl/COPYING
D	externals/pio2/src/gptl/ChangeLog
D	externals/pio2/src/gptl/GPTLget_memusage.c
D	externals/pio2/src/gptl/GPTLprint_memusage.c
D	externals/pio2/src/gptl/GPTLutil.c
D	externals/pio2/src/gptl/README
D	externals/pio2/src/gptl/f_wrappers.c
D	externals/pio2/src/gptl/gptl.c
D	externals/pio2/src/gptl/gptl.h
D	externals/pio2/src/gptl/gptl.inc
D	externals/pio2/src/gptl/gptl_papi.c
D	externals/pio2/src/gptl/perf_mod.F90
D	externals/pio2/src/gptl/perf_utils.F90
D	externals/pio2/src/gptl/private.h
D	externals/pio2/src/gptl/threadutil.c
D	externals/pio2/tests/CMakeLists.txt
D	externals/pio2/tests/general/CMakeLists.txt
D	externals/pio2/tests/general/ncdf_fail.F90.in
D	externals/pio2/tests/general/ncdf_get_put.F90.in
D	externals/pio2/tests/general/ncdf_simple_tests.F90.in
D	externals/pio2/tests/general/pio_decomp_fillval.F90.in
D	externals/pio2/tests/general/pio_decomp_fillval2.F90
D	externals/pio2/tests/general/pio_decomp_tests.F90.in
D	externals/pio2/tests/general/pio_fail.F90.in
D	externals/pio2/tests/general/pio_file_fail.F90.in
D	externals/pio2/tests/general/pio_file_simple_tests.F90.in
D	externals/pio2/tests/general/pio_init_finalize.F90.in
D	externals/pio2/tests/general/test_memleak.c
D	externals/pio2/tests/general/util/pio_tf_f90gen.pl
D	externals/pio2/tests/general/util/pio_tutil.F90
D	externals/pio2/tests/performance/CMakeLists.txt
D	externals/pio2/tests/performance/gensimple.pl
D	externals/pio2/tests/performance/kt.PIO1.perfmakefile
D	externals/pio2/tests/performance/pioperformance.F90
D	externals/pio2/tests/unit/CMakeLists.txt
D	externals/pio2/tests/unit/Levy_Notes
D	externals/pio2/tests/unit/README
D	externals/pio2/tests/unit/basic_tests.F90
D	externals/pio2/tests/unit/driver.F90
D	externals/pio2/tests/unit/global_vars.F90
D	externals/pio2/tests/unit/input.nl
D	externals/pio2/tests/unit/nc_set_log_level2.c
D	externals/pio2/tests/unit/ncdf_tests.F90
D	externals/pio2/tests/unit/not_netcdf.ieee
D	externals/pio2/tests/unit/test_names.c
D	externals/pio2/tests/unit/test_nc4.c
D	scripts/Testing/Testcases/ICP_script
D	scripts/Testing/Testcases/LAR_script
D	scripts/Testing/Testcases/OCP_script
D	scripts/Testing/Testcases/README
D	scripts/Testing/testreporter.pl
M	scripts/Tools/case.build
M	scripts/Tools/case.setup
M	scripts/Tools/standard_script_setup.py
M	scripts/Tools/update_acme_tests
M	scripts/Tools/xmlchange
M	scripts/Tools/xmlconvertors/config_pes_converter.py
M	scripts/Tools/xmlconvertors/grid_xml_converter.py
M	scripts/Tools/xmlquery
M	scripts/create_newcase
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A	scripts/lib/CIME/BuildTools/__init__.py
A	scripts/lib/CIME/BuildTools/cmakemacroswriter.py
A	scripts/lib/CIME/BuildTools/configure.py
A	scripts/lib/CIME/BuildTools/macroconditiontree.py
A	scripts/lib/CIME/BuildTools/macrowriterbase.py
A	scripts/lib/CIME/BuildTools/makemacroswriter.py
A	scripts/lib/CIME/BuildTools/possiblevalues.py
A	scripts/lib/CIME/BuildTools/valuesetting.py
A	scripts/lib/CIME/SystemTests/README
A	scripts/lib/CIME/SystemTests/__init__.py
A	scripts/lib/CIME/SystemTests/dae.py
A	scripts/lib/CIME/SystemTests/eri.py
A	scripts/lib/CIME/SystemTests/erio.py
A	scripts/lib/CIME/SystemTests/erp.py
A	scripts/lib/CIME/SystemTests/err.py
A	scripts/lib/CIME/SystemTests/ers.py
A	scripts/lib/CIME/SystemTests/ert.py
A	scripts/lib/CIME/SystemTests/homme.py
A	scripts/lib/CIME/SystemTests/icp.py
A	scripts/lib/CIME/SystemTests/lii.py
A	scripts/lib/CIME/SystemTests/nck.py
A	scripts/lib/CIME/SystemTests/ncr.py
A	scripts/lib/CIME/SystemTests/pea.py
A	scripts/lib/CIME/SystemTests/pem.py
A	scripts/lib/CIME/SystemTests/pet.py
A	scripts/lib/CIME/SystemTests/pfs.py
A	scripts/lib/CIME/SystemTests/pre.py
A	scripts/lib/CIME/SystemTests/rep.py
A	scripts/lib/CIME/SystemTests/seq.py
A	scripts/lib/CIME/SystemTests/sms.py
A	scripts/lib/CIME/SystemTests/ssp.py
A	scripts/lib/CIME/SystemTests/system_tests_common.py
A	scripts/lib/CIME/SystemTests/system_tests_compare_two.py
A	scripts/lib/CIME/SystemTests/test_utils/__init__.py
A	scripts/lib/CIME/SystemTests/test_utils/user_nl_utils.py
A	scripts/lib/CIME/XML/__init__.py
A	scripts/lib/CIME/XML/archive.py
A	scripts/lib/CIME/XML/batch.py
A	scripts/lib/CIME/XML/compilerblock.py
A	scripts/lib/CIME/XML/compilers.py
A	scripts/lib/CIME/XML/component.py
A	scripts/lib/CIME/XML/compsets.py
A	scripts/lib/CIME/XML/entry_id.py
A	scripts/lib/CIME/XML/env_archive.py
A	scripts/lib/CIME/XML/env_base.py
A	scripts/lib/CIME/XML/env_batch.py
A	scripts/lib/CIME/XML/env_build.py
A	scripts/lib/CIME/XML/env_case.py
A	scripts/lib/CIME/XML/env_mach_pes.py
A	scripts/lib/CIME/XML/env_mach_specific.py
A	scripts/lib/CIME/XML/env_run.py
A	scripts/lib/CIME/XML/env_test.py
A	scripts/lib/CIME/XML/files.py
A	scripts/lib/CIME/XML/generic_xml.py
A	scripts/lib/CIME/XML/grids.py
A	scripts/lib/CIME/XML/headers.py
A	scripts/lib/CIME/XML/lt_archive.py
A	scripts/lib/CIME/XML/machines.py
A	scripts/lib/CIME/XML/namelist_definition.py
A	scripts/lib/CIME/XML/pes.py
A	scripts/lib/CIME/XML/pio.py
A	scripts/lib/CIME/XML/standard_module_setup.py
A	scripts/lib/CIME/XML/testlist.py
A	scripts/lib/CIME/XML/tests.py
A	scripts/lib/CIME/XML/testspec.py
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A	scripts/lib/CIME/bless_test_results.py
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A	scripts/lib/CIME/buildlib.py
A	scripts/lib/CIME/buildnml.py
A	scripts/lib/CIME/case.py
A	scripts/lib/CIME/case_cmpgen_namelists.py
A	scripts/lib/CIME/case_lt_archive.py
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A	scripts/lib/CIME/case_setup.py
A	scripts/lib/CIME/case_st_archive.py
A	scripts/lib/CIME/case_submit.py
A	scripts/lib/CIME/case_test.py
A	scripts/lib/CIME/check_input_data.py
A	scripts/lib/CIME/check_lockedfiles.py
A	scripts/lib/CIME/code_checker.py
A	scripts/lib/CIME/compare_namelists.py
A	scripts/lib/CIME/compare_test_results.py
A	scripts/lib/CIME/get_timing.py
A	scripts/lib/CIME/hist_utils.py
A	scripts/lib/CIME/namelist.py
A	scripts/lib/CIME/nmlgen.py
A	scripts/lib/CIME/preview_namelists.py
A	scripts/lib/CIME/provenance.py
A	scripts/lib/CIME/simple_compare.py
A	scripts/lib/CIME/test_scheduler.py
A	scripts/lib/CIME/test_status.py
A	scripts/lib/CIME/test_utils.py
A	scripts/lib/CIME/tests/README
A	scripts/lib/CIME/tests/SystemTests/__init__.py
A	scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
A	scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two_link_to_case2_output.py
A	scripts/lib/CIME/tests/SystemTests/test_utils/__init__.py
A	scripts/lib/CIME/tests/SystemTests/test_utils/test_user_nl_utils.py
A	scripts/lib/CIME/tests/__init__.py
A	scripts/lib/CIME/tests/case_fake.py
A	scripts/lib/CIME/tests/test_case_fake.py
A	scripts/lib/CIME/user_mod_support.py
A	scripts/lib/CIME/utils.py
A	scripts/lib/CIME/wait_for_tests.py
A	scripts/lib/cs.status.template
A	scripts/lib/cs.submit.template
A	scripts/lib/jenkins_generic_job.py
A	scripts/lib/update_acme_tests.py
M	scripts/manage_testlists
A	scripts/tests/CMakeLists.txt
A	scripts/tests/CTestConfig.cmake
A	scripts/tests/cpl.hi1.nc.test
A	scripts/tests/cpl.hi2.nc.test
A	scripts/tests/cpl.log.failmemleak.gz
A	scripts/tests/cpl.log.passmemleak.gz
A	scripts/tests/list_tests
A	scripts/tests/scripts_regression_tests.py
A	scripts/tests/user_mods_test1/include_user_mods
A	scripts/tests/user_mods_test1/user_nl_comp
A	scripts/tests/user_mods_test1/user_nl_cpl
A	scripts/tests/user_mods_test2/SourceMods/src.drv/somefile.F90
A	scripts/tests/user_mods_test2/user_nl_cpl
D	share/csm_share/README
D	share/csm_share/include/dynamic_vector_procdef.inc
D	share/csm_share/include/dynamic_vector_typedef.inc
D	share/csm_share/include/shr_assert.h
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D	share/timing/Makefile
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A	src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
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A	src/components/data_comps/datm/datm_comp_mod.F90
A	src/components/data_comps/datm/datm_shr_mod.F90
A	src/components/data_comps/datm/doc/SOM.pdf
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A	src/components/data_comps/datm/doc/intro.xml
A	src/components/data_comps/datm/doc/rundocbook.csh
A	src/components/data_comps/datm/doc/streams.xml
A	src/components/data_comps/datm/doc/ug.xml
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A	src/components/data_comps/dlnd/cime_config/buildlib
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D	utils/python/CIME/SystemTests/test_utils/__init__.py
D	utils/python/CIME/SystemTests/test_utils/user_nl_utils.py
D	utils/python/CIME/XML/__init__.py
D	utils/python/CIME/XML/archive.py
D	utils/python/CIME/XML/batch.py
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D	utils/python/CIME/XML/component.py
D	utils/python/CIME/XML/compsets.py
D	utils/python/CIME/XML/entry_id.py
D	utils/python/CIME/XML/env_archive.py
D	utils/python/CIME/XML/env_base.py
D	utils/python/CIME/XML/env_batch.py
D	utils/python/CIME/XML/env_build.py
D	utils/python/CIME/XML/env_case.py
D	utils/python/CIME/XML/env_mach_pes.py
D	utils/python/CIME/XML/env_mach_specific.py
D	utils/python/CIME/XML/env_run.py
D	utils/python/CIME/XML/env_test.py
D	utils/python/CIME/XML/files.py
D	utils/python/CIME/XML/generic_xml.py
D	utils/python/CIME/XML/grids.py
D	utils/python/CIME/XML/headers.py
D	utils/python/CIME/XML/lt_archive.py
D	utils/python/CIME/XML/machines.py
D	utils/python/CIME/XML/namelist_definition.py
D	utils/python/CIME/XML/pes.py
D	utils/python/CIME/XML/pio.py
D	utils/python/CIME/XML/standard_module_setup.py
D	utils/python/CIME/XML/testlist.py
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D	utils/python/tests/user_mods_test1/include_user_mods
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D	utils/python/update_acme_tests.py

======================================================================

======================================================================

Originator: Chris Fischer
Date: 2-23-2017
Tag: cime5.2.0-alpha.26
Answer Changes: None
Tests: scripts_regression_tests on some for PRs #1159,#1172
       B1850 test for PR#1159
Dependencies:  For allactive configurations, https://github.com/CESM-Development/cime_config
               is needed.

Brief Summary:
   -Move cesm/allactive out of the cime tag.
   -Pop namelist changes,
   -Make sure pio1 finds netcdf4
   -add --mpilib option to create_test
   -Add S-case test to cime_developers

User interface changes: adds --mpilib optional argument to create_test

PR summary: git log --oneline --first-parent [previous_tag]..master
fd200f6 Merge pull request #1181 from ESMCI/agsalin/add_S_case_test
d33e6a2 Merge pull request #1180 from jedwards4b/create_test_mpilib_option
d210e0b Merge pull request #1159 from bertinia/master
ad5ff79 Merge pull request #1172 from ESMCI/mvertens/pop_python_namelist
4ab605f Merge pull request #1177 from jedwards4b/pio1_bld_fixes

Modified files: git diff --name-status [previous_tag]
D       cime_config/cesm/allactive/config_compsets.xml
D       cime_config/cesm/allactive/config_pes.xml
D       cime_config/cesm/allactive/testlist_allactive.xml
D       cime_config/cesm/allactive/testmods_dirs/allactive/cesm2dev01/include_user_mods
D       cime_config/cesm/allactive/testmods_dirs/allactive/cesm2dev01io/include_user_mods
D       cime_config/cesm/allactive/testmods_dirs/allactive/cism/oneway/README
D       cime_config/cesm/allactive/testmods_dirs/allactive/cism/oneway/shell_commands
D       cime_config/cesm/allactive/testmods_dirs/allactive/cism/trilinos/README
D       cime_config/cesm/allactive/testmods_dirs/allactive/cism/trilinos/include_user_mods
D       cime_config/cesm/allactive/testmods_dirs/allactive/cism/trilinos/shell_commands
D       cime_config/cesm/allactive/testmods_dirs/allactive/cism/trilinos/user_nl_cism
D       cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_cam
D       cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_cice
D       cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_clm
D       cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_mosart
D       cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_pop
D       cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_rtm
D       cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/include_user_mods
D       cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_cam
D       cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_cice
D       cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_cism
D       cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_clm
D       cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_mosart
D       cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_pop
D       cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_rtm
D       cime_config/cesm/allactive/usermods_dirs/b1850/shell_commands
D       cime_config/cesm/allactive/usermods_dirs/b1850/user_nl_clm
D       cime_config/cesm/allactive/usermods_dirs/b1850/user_nl_cpl
D       cime_config/cesm/allactive/usermods_dirs/b1850_cism/include_user_mods
D       cime_config/cesm/allactive/usermods_dirs/b1850_cism/user_nl_cism
M       cime_config/cesm/machines/Makefile
M       externals/pio1/pio/CMakeLists.txt
M       scripts/create_newcase
M       scripts/create_test
M       utils/python/CIME/build.py
M       utils/python/CIME/namelist.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/update_acme_tests.py

======================================================================

======================================================================

Originator: Bill Sacks
Date: 02-21-2017
Tag: cime5.2.0-alpha.25
Answer Changes: Likely answer changes on yellowstone relative to
                alpha.24, but not relative to alpha.23
Tests: One CLM test that failed in alpha.24
Dependencies: none

Brief Summary: Back out the compiler update on yellowstone

User interface changes: none

PR summary: git log --oneline --first-parent [previous_tag]..master

bac0ce7 Merge pull request #1174 from jedwards4b/compiler_backout

Modified files: git diff --name-status [previous_tag]

M       cime_config/cesm/machines/config_machines.xml

======================================================================

======================================================================

Originator: Bill Sacks
Date: 02-17-2017
Tag: cime5.2.0-alpha.24
Answer Changes: None documented in merge log messages for 'Test status'
Tests: scripts_regression_tests.py run on some changes, but not this tag
Dependencies:

Brief Summary: Major changes include:
- Bring in ACME changes up to 5.1
- Fix Fortran unit tests

User interface changes: The following changes were documented:
- create_newcase --mach is now --machine to match create_test
- Removes PRE test from cime_developer
- Many changes in PR #1123 ("Merge the maint-cime5.1 branch along with ACME's
  changes to 5.1"), most (all?) of which just affect ACME
- -p flag to xmlquery
- -a option to case.submit

PR summary: git log --oneline --first-parent [previous_tag]..master

980a6b8 Merge pull request #1167 from fischer-ncar/drip_annual_changes_test_fix
e8929e2 Merge pull request #1165 from ESMCI/jayeshkrishna/cond_incl_make_undefine
9554cce Merge pull request #1160 from jedwards4b/get_timing_correction
642cc32 Merge pull request #1164 from billsacks/unit_tests_local
938e9b0 Merge pull request #1157 from billsacks/unit_test_parallel
3929369 Merge pull request #1149 from jedwards4b/correct_path_query_for_testlistxml
9b1630f Merge pull request #1152 from jedwards4b/pio_bld_fix
db95da1 Merge pull request #1151 from ESMCI/agsalin/gitignore
c80c65c Merge pull request #1145 from billsacks/unit_test_cleanup
e8d8c67 fix pylint issue
7ef40c0 Merge pull request #1140 from jedwards4b/cleanbld_refactor
bd3fc66 Merge pull request #1135 from jedwards4b/unit_test_refactor
534aade Merge branch 'jgfouca/allow_arbitrary_batch_args' (PR #1137)
d0a1616 Merge pull request #1136 from ESMCI/jgfouca/handle_batch_errors_better
26cd982 Merge pull request #1131 from bertinia/master
26dd1e2 Merge pull request #1126 from ESMCI/jgfouca/bless_test_update
98c0ff1 Merge pull request #1127 from ESMCI/jgfouca/namelist_allow_star
a51fb8c Merge pull request #1128 from ESMCI/jgfouca/xmlquery_partial_match
77cf83e Merge branch 'worleyph/timing/non-null-terminated_string_support_fix' into master (PR #895)
21ea438 Merge pull request #1122 from gold2718/DAEfix
7248aef Merge branch 'jgfouca/acme5.1_to_esmci_try2' (PR #1123)
69627c8 Hotfix for minor whitespace issue in exception text
2456b56 Merge pull request #1110 from ESMCI/jgfouca/fixes_to_recent_new_tests
18734f3 Merge pull request #1104 from jedwards4b/tested_msg
11e30d6 Merge pull request #1109 from gold2718/TimeMgrFix
e367fb4 Merge pull request #1098 from ESMCI/mfdeakin-sandia/map_field_build
ff4f207 Merge pull request #1095 from gold2718/DAdesp
a93184d Merge pull request #1097 from jedwards4b/tie_timers_to_xml
618f515 Merge pull request #1092 from mgduda/esmf_timemgr/i8_interval_division
654504c Merge pull request #1094 from ESMCI/jgfouca/err_resub_fix
f56a446 Merge pull request #1090 from jedwards4b/lt_archive_issues
ccd1e96 Merge pull request #1082 from jedwards4b/addback_mask_grid
81f08e1 Merge pull request #1081 from jedwards4b/fix_no_nesting_fail
1d083cc fix pylint issue
9e2764c Merge pull request #1080 from jedwards4b/config_compilers_conformity
ccb7c22 Revert "Change over acme env usage to correct syntax"

Modified files: git diff --name-status [previous_tag]

M	.gitignore
M	CMakeLists.txt
M	README.unit_testing
M	cime_config/acme/allactive/config_compsets.xml
M	cime_config/acme/allactive/config_compsets.xml.cime2
M	cime_config/acme/allactive/config_pes.xml
M	cime_config/acme/allactive/config_pes.xml.cime2
M	cime_config/acme/allactive/config_pesall.xml
D	cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/user_nl_cam
D	cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/user_nl_clm
M	cime_config/acme/config_files.xml
M	cime_config/acme/config_grids.xml
M	cime_config/acme/machines/Depends.cetus
M	cime_config/acme/machines/Depends.intel
M	cime_config/acme/machines/Depends.intel14
M	cime_config/acme/machines/Depends.intelmic
M	cime_config/acme/machines/Depends.intelmic14
M	cime_config/acme/machines/Depends.mira
D	cime_config/acme/machines/Depends.titan.pgi_acc
A	cime_config/acme/machines/Depends.titan.pgiacc
D	cime_config/acme/machines/Depends.titan.pgicuda
M	cime_config/acme/machines/Makefile
M	cime_config/acme/machines/config_batch.xml
M	cime_config/acme/machines/config_compilers.xml
M	cime_config/acme/machines/config_machines.xml
M	cime_config/acme/machines/config_pio.xml
D	cime_config/acme/machines/env_mach_specific.blues
D	cime_config/acme/machines/env_mach_specific.cascade
D	cime_config/acme/machines/env_mach_specific.cetus
D	cime_config/acme/machines/env_mach_specific.constance
D	cime_config/acme/machines/env_mach_specific.corip1
D	cime_config/acme/machines/env_mach_specific.edison
D	cime_config/acme/machines/env_mach_specific.eos
D	cime_config/acme/machines/env_mach_specific.juqueen
D	cime_config/acme/machines/env_mach_specific.lawrencium-lr2
D	cime_config/acme/machines/env_mach_specific.linux-generic
D	cime_config/acme/machines/env_mach_specific.mac
D	cime_config/acme/machines/env_mach_specific.mira
D	cime_config/acme/machines/env_mach_specific.mustang
D	cime_config/acme/machines/env_mach_specific.oic2
D	cime_config/acme/machines/env_mach_specific.oic5
D	cime_config/acme/machines/env_mach_specific.sierra
D	cime_config/acme/machines/env_mach_specific.sooty
D	cime_config/acme/machines/env_mach_specific.stampede
D	cime_config/acme/machines/env_mach_specific.titan
D	cime_config/acme/machines/env_mach_specific.userdefined
D	cime_config/acme/machines/env_mach_specific.wolf
M	cime_config/acme/machines/syslog.cetus
A	cime_config/acme/machines/syslog.cori-haswell
A	cime_config/acme/machines/syslog.cori-knl
D	cime_config/acme/machines/syslog.corip1
M	cime_config/acme/machines/syslog.edison
M	cime_config/acme/machines/syslog.mira
M	cime_config/acme/machines/syslog.titan
A	cime_config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
A	cime_config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
M	cime_config/buildlib.pio
M	cime_config/cesm/allactive/testlist_allactive.xml
M	cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_clm
M	cime_config/cesm/config_archive.xml
M	cime_config/cesm/config_files.xml
M	cime_config/cesm/machines/Makefile
M	cime_config/cesm/machines/config_compilers.xml
M	cime_config/cesm/machines/config_lt_archive.xml
M	cime_config/cesm/machines/config_machines.xml
M	cime_config/config_tests.xml
M	cime_config/xml_schemas/config_machines.xsd
M	components/data_comps/datm/cime_config/config_component.xml
A	components/data_comps/desp/cime_config/buildlib
A	components/data_comps/desp/cime_config/buildnml
A	components/data_comps/desp/cime_config/config_component.xml
A	components/data_comps/desp/cime_config/namelist_definition_desp.xml
A	components/data_comps/desp/cime_config/user_nl_desp
A	components/data_comps/desp/desp_comp_mod.F90
A	components/data_comps/desp/esp_comp_mct.F90
A	components/data_comps/desp/esp_utils.F90
M	components/data_comps/dlnd/cime_config/config_component.xml
M	components/data_comps/docn/cime_config/config_component.xml
M	driver_cpl/cime_config/buildnml
M	driver_cpl/cime_config/config_component.xml
M	driver_cpl/cime_config/config_component_acme.xml
M	driver_cpl/cime_config/config_component_cesm.xml
M	driver_cpl/cime_config/config_compsets.xml
M	driver_cpl/cime_config/namelist_definition_drv.xml
M	driver_cpl/cime_config/user_nl_cpl
M	driver_cpl/driver/cesm_comp_mod.F90
M	driver_cpl/driver/component_mod.F90
M	driver_cpl/driver/seq_flux_mct.F90
M	driver_cpl/driver/seq_io_mod.F90
M	driver_cpl/shr/seq_infodata_mod.F90
M	driver_cpl/shr/seq_timemgr_mod.F90
M	driver_cpl/unit_test/vertical_gradient_calculator_test/plot_gradient
M	externals/CMake/CESM_utils.cmake
A	externals/CMake/CIME_utils.cmake
M	externals/CMake/Compilers.cmake
D	externals/CMake/FindNETCDF.cmake
D	externals/CMake/FindNETCDF_C.cmake
D	externals/CMake/FindNETCDF_Fortran.cmake
D	externals/CMake/FindPnetcdf.cmake
M	externals/CMake/FindpFUnit.cmake
D	externals/CMake/LibFindMacros.cmake
M	externals/CMake/README.md
M	externals/pio1/pio/CMakeLists.txt
M	externals/pio2/src/flib/piolib_mod.F90
M	scripts/Tools/bless_test_results
M	scripts/Tools/case.build
M	scripts/Tools/case.submit
A	scripts/Tools/cron_script
M	scripts/Tools/xmlquery
M	scripts/create_newcase
M	scripts/create_test
M	share/csm_share/shr/shr_flux_mod.F90
M	share/csm_share/test/unit/dynamic_vector/CMakeLists.txt
M	share/esmf_wrf_timemgr/ESMF_TimeIntervalMod.F90
M	share/esmf_wrf_timemgr/ESMF_TimeMod.F90
M	share/timing/ChangeLog
M	share/timing/f_wrappers.c
M	share/timing/gptl.c
M	tools/configure
M	tools/mapping/map_field/INSTALL
M	tools/unit_testing/Examples/circle_area/tests/CMakeLists.txt
M	tools/unit_testing/Examples/circle_area/tests/pFUnit/CMakeLists.txt
M	tools/unit_testing/Examples/interpolate_1d/tests/CMakeLists.txt
M	tools/unit_testing/Examples/interpolate_1d/tests/pFUnit/CMakeLists.txt
M	tools/unit_testing/README
M	tools/unit_testing/run_tests.py
M	utils/data_assimilation/da_no_data_mod.sh
M	utils/python/CIME/BuildTools/cmakemacroswriter.py
M	utils/python/CIME/SystemTests/dae.py
M	utils/python/CIME/SystemTests/err.py
M	utils/python/CIME/SystemTests/homme.py
A	utils/python/CIME/SystemTests/pre.py
M	utils/python/CIME/SystemTests/system_tests_common.py
M	utils/python/CIME/XML/compilerblock.py
M	utils/python/CIME/XML/compilers.py
M	utils/python/CIME/XML/entry_id.py
M	utils/python/CIME/XML/env_batch.py
M	utils/python/CIME/XML/grids.py
M	utils/python/CIME/XML/namelist_definition.py
M	utils/python/CIME/XML/pes.py
M	utils/python/CIME/bless_test_results.py
M	utils/python/CIME/build.py
M	utils/python/CIME/case.py
M	utils/python/CIME/case_cmpgen_namelists.py
M	utils/python/CIME/case_lt_archive.py
M	utils/python/CIME/case_run.py
M	utils/python/CIME/case_st_archive.py
M	utils/python/CIME/case_submit.py
M	utils/python/CIME/check_input_data.py
M	utils/python/CIME/code_checker.py
M	utils/python/CIME/compare_namelists.py
M	utils/python/CIME/compare_test_results.py
M	utils/python/CIME/get_timing.py
M	utils/python/CIME/provenance.py
M	utils/python/CIME/test_scheduler.py
M	utils/python/CIME/test_status.py
M	utils/python/CIME/utils.py
M	utils/python/tests/scripts_regression_tests.py
M	utils/python/update_acme_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 01-30-2017
Tag: cime5.2.0-alpha.23
Answer Changes: None
Tests: cesm_tests, scripts_regression_tests.py
Dependencies:

Brief Summary: new tfreeze_option setting for cesm, some system test refactoring for
	improved reuse of tests, single test no longer has external SHAREDLIBROOT setting
	New pop default settings.  Fix for clm test mapping file.

User interface changes:

PR summary: git log --oneline --first-parent [previous_tag]..master

feb28f3 Merge pull request #1076 from ESMCI/mvertens/fix_clm_usrdat
853da02 Merge pull request #1069 from jtruesdal/cime_plus_defs
38cc009 Merge pull request #1068 from jedwards4b/test_fixes
3d0965a Merge pull request #1062 from ESMCI/mvertens/tfreeze_option
19a104d Change over acme env usage to correct syntax
8d92fa0 Merge pull request #1048 from jedwards4b/depends_file_precidence
1e3008f Merge pull request #1054 from ESMCI/jgfouca/fix_eri_resub
5de3b4d Merge pull request #1055 from ESMCI/jgfouca/add_support_for_shell_in_XML
18479ce Merge pull request #1039 from ESMCI/jgfouca/lock_env_batch
3a84a6e Merge pull request #1046 from jedwards4b/some_log_issues
0489798 Fix Z_FullSystemTests on batch machines
742c8dc Merge pull request #1036 from ESMCI/jgfouca/fix_resubmission_of_some_testcases
49a7de6 fix pylint issue
289e39e Merge pull request #1034 from ESMCI/jgfouca/better_support_for_custom_input_files
869f904 Merge pull request #1025 from ESMCI/jgfouca/more_create_test_force_pecount_chgs
25de83b update ChangeLog
33d74c3 Merge pull request #1030 from jedwards4b/fix_drive_namelist_issue


Modified files: git diff --name-status
M       cime_config/acme/machines/config_batch.xml
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/acme/machines/config_machines.xml
M       cime_config/cesm/config_grids.xml
M       cime_config/cesm/machines/Makefile
M       cime_config/cesm/machines/config_machines.xml
M       cime_config/config_tests.xml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/cime_config/config_component_acme.xml
M       driver_cpl/cime_config/config_component_cesm.xml
M       driver_cpl/cime_config/namelist_definition_drv.xml
M       scripts/create_newcase
M       utils/python/CIME/BuildTools/configure.py
M       utils/python/CIME/SystemTests/eri.py
M       utils/python/CIME/SystemTests/erp.py
M       utils/python/CIME/SystemTests/ers.py
M       utils/python/CIME/SystemTests/ncr.py
M       utils/python/CIME/SystemTests/seq.py
M       utils/python/CIME/SystemTests/system_tests_common.py
M       utils/python/CIME/XML/generic_xml.py
M       utils/python/CIME/XML/namelist_definition.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_run.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/check_input_data.py
M       utils/python/CIME/check_lockedfiles.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py
M       utils/python/update_acme_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 01-20-2017
Tag: cime5.2.0-alpha.22
Answer Changes: None
Tests: cesm tests, scripts_regression_tests
Dependencies:

Brief Summary: Fix issue in drv buildnml reading xml file.

User interface changes: Added error if buildnml file not found.

Modified files: git diff --name-status
M       driver_cpl/cime_config/buildnml
M       utils/python/CIME/XML/namelist_definition.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 01-19-2017
Tag: cime5.2.0-alpha.21
Answer Changes: None
Tests: scripts_regression_tests, cesm testing
Dependencies:

Brief Summary: Add science_support field for CESM.  Add schema files
	for config_batch, config_compsets xml files.
	Add a config_machines_template.xml for documentation and porting.
	Add model dependent config_component_$model.xml files for driver.

User interface changes: New flag in create_newcase --run-unsupported (cesm only)
	New flag in create_clone --cime-output-root to support cloning across user.

Modified files: git diff --name-status
M	cime_config/acme/config_files.xml
M	cime_config/acme/machines/config_batch.xml
M	cime_config/cesm/allactive/config_compsets.xml
M	cime_config/cesm/config_files.xml
M	cime_config/cesm/machines/config_batch.xml
D	cime_config/cesm/machines/config_batch.xsd
M	cime_config/cesm/machines/config_compilers.xml
A	cime_config/xml_schemas/config_batch.xsd
A	cime_config/xml_schemas/config_compsets.xsd
A	cime_config/xml_schemas/config_machines_template.xml
M	cime_config/xml_schemas/config_pes.xsd
M	cime_config/xml_schemas/entry_id_base.xsd
M	cime_config/xml_schemas/testlist.xsd
M	components/data_comps/datm/cime_config/buildnml
M	components/data_comps/dice/cime_config/buildnml
M	components/data_comps/dlnd/cime_config/buildnml
M	components/data_comps/docn/cime_config/buildnml
M	components/data_comps/drof/cime_config/buildnml
M	components/data_comps/dwav/cime_config/buildnml
M	driver_cpl/cime_config/buildnml
M	driver_cpl/cime_config/config_component.xml
A	driver_cpl/cime_config/config_component_acme.xml
A	driver_cpl/cime_config/config_component_cesm.xml
M	driver_cpl/cime_config/config_compsets.xml
M	scripts/create_clone
M	scripts/create_newcase
M	scripts/create_test
M	tools/cprnc/compare_vars_mod.F90.in
M	tools/cprnc/cprnc.F90
M	tools/cprnc/filestruct.F90
M	utils/python/CIME/XML/batch.py
M	utils/python/CIME/XML/compilers.py
M	utils/python/CIME/XML/compsets.py
M	utils/python/CIME/XML/env_mach_pes.py
M	utils/python/CIME/XML/files.py
M	utils/python/CIME/XML/generic_xml.py
M	utils/python/CIME/XML/grids.py
M	utils/python/CIME/XML/machines.py
M	utils/python/CIME/XML/namelist_definition.py
M	utils/python/CIME/XML/pes.py
M	utils/python/CIME/XML/testlist.py
M	utils/python/CIME/case.py
M	utils/python/CIME/nmlgen.py
M	utils/python/CIME/preview_namelists.py
M	utils/python/CIME/test_scheduler.py
M	utils/python/CIME/utils.py
M	utils/python/tests/scripts_regression_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 01-15-2017
Tag: cime5.2.0-alpha.20
Answer Changes: None
Tests: scripts_regression_tests, cesm2_0_beta05 testing
Dependencies:

Brief Summary: Adds schema for config_pes and overrides section to that file
               Adds support for new machine cheyenne
User interface changes:

Modified files: git diff --name-status
M       cime_config/acme/allactive/config_pes.xml
	M       cime_config/acme/config_files.xml
	M       cime_config/cesm/allactive/config_pes.xml
	M       cime_config/cesm/allactive/testlist_allactive.xml
	M       cime_config/cesm/config_files.xml
	M       cime_config/cesm/machines/config_batch.xml
	M       cime_config/cesm/machines/config_compilers.xml
	M       cime_config/cesm/machines/config_machines.xml
	A       cime_config/xml_schemas/config_pes.xsd
	M       driver_cpl/cime_config/testdefs/testlist_drv.xml
	M       utils/python/CIME/XML/machines.py
	M       utils/python/CIME/XML/pes.py
	M       utils/python/CIME/case.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 01-12-2017
Tag: cime5.2.0-alpha.19
Answer Changes: None
Tests: scripts_regression_tests.py (on cheyenne)
Dependencies:

Brief Summary:  Add support for new NCAR HPC system Cheyenne

User interface changes: none

Modified files: git diff --name-status

======================================================================

======================================================================

Originator: Jim Edwards
Date: 01-11-2017
Tag: cime5.2.0-alpha.18
Answer Changes: Climate Changing
Tests: scripts_regression_tests cesm2_0_alpha05d
Dependencies: (cesm requires pop version 20161219 or older

Brief Summary:  Needed to back out changes that require a new pop version
                           Add schema definition for config_machines.xml

User interface changes:

Modified files: git diff --name-status
M       cime_config/acme/machines/config_machines.xml
M       cime_config/acme/machines/config_pio.xml
M       cime_config/buildlib.pio
M       cime_config/cesm/config_files.xml
M       cime_config/cesm/config_grids.xml
M       cime_config/cesm/machines/config_machines.xml
A       cime_config/xml_schemas/config_machines.xsd
M       driver_cpl/bld/testdir/env_run.xml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/cime_config/namelist_definition_drv.xml
M       driver_cpl/shr/seq_infodata_mod.F90
M       utils/python/CIME/XML/generic_xml.py
M       utils/python/CIME/XML/machines.py


======================================================================

======================================================================

Originator: Jim Edwards
Date: 01-10-2017
Tag: cime5.2.0-alpha.17
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:

Brief Summary: Fix issue with netcdf flags in Makefile, update nersc systems
	add runtime env to provenance output

User interface changes:

Modified files: git diff --name-status
M       cime_config/acme/machines/Makefile
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/cesm/allactive/config_compsets.xml
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/config_grids.xml
M       cime_config/cesm/machines/Makefile
M       cime_config/cesm/machines/config_compilers.xml
M       cime_config/cesm/machines/config_machines.xml
M       cime_config/xml_schemas/config_compilers_v2.xsd
M       driver_cpl/bld/testdir/env_run.xml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/cime_config/namelist_definition_drv.xml
M       driver_cpl/shr/seq_infodata_mod.F90
M       scripts/Tools/case_diff
M       scripts/Tools/code_checker
M       utils/python/CIME/SystemTests/system_tests_common.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/XML/machines.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_cmpgen_namelists.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/case_test.py
A       utils/python/CIME/code_checker.py
M       utils/python/CIME/compare_namelists.py
M       utils/python/CIME/provenance.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 01-04-2017
Tag: cime5.2.0-alpha.15
Answer Changes: None
Tests: scripts_regression_tests, cesm development
Dependencies:

Brief Summary: fix issues with clm 1pt configurations, issues with pio namelist settings, data assimilation script arguments, sharedarea context manager,

User interface changes:

Modified files: git diff --name-status
M       cime_config/cesm/allactive/config_compsets.xml
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/config_grids.xml
M       cime_config/cesm/machines/config_compilers.xml
M       cime_config/cesm/machines/config_machines.xml
M       scripts/Tools/pelayout
M       share/csm_share/shr/shr_pio_mod.F90
M       utils/python/CIME/case.py
M       utils/python/CIME/case_run.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/check_input_data.py
M       utils/python/CIME/preview_namelists.py
M       utils/python/CIME/provenance.py
M       utils/python/CIME/utils.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 01-03-2017
Tag: cime5.2.0-alpha.14
Answer Changes: None
Tests: scripts_regression_tests, cesm component testing

Dependencies:

Brief Summary: Changes several variables of the form XXX_COMP to variables of the
	form XXX with values for each COMP.   Remove clm40 from all active
	compsets.  Build gptl prior to MCT.   Performance improvements in buildnml

User interface changes: Perl scripts in component models can no longer read these
	COMP variables directely  - they must now use xmlquery.

Modified files: git diff --name-status
M       cime_config/acme/config_files.xml
M       cime_config/acme/machines/Makefile
M       cime_config/buildlib.mct
A       cime_config/buildlib.mpi-serial
M       cime_config/cesm/allactive/config_compsets.xml
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/config_files.xml
M       cime_config/cesm/config_grids.xml
M       cime_config/cesm/machines/Makefile
M       cime_config/cesm/machines/config_machines.xml
M       cime_config/config_headers.xml
M       cime_config/xml_schemas/entry_id_base.xsd
M       cime_config/xml_schemas/entry_id_namelist.xsd
M       components/data_comps/datm/cime_config/buildnml
M       components/data_comps/datm/cime_config/namelist_definition_datm.xml
M       components/data_comps/dice/cime_config/buildnml
M       components/data_comps/dice/cime_config/namelist_definition_dice.xml
M       components/data_comps/dlnd/cime_config/buildnml
M       components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
M       components/data_comps/docn/cime_config/buildnml
M       components/data_comps/docn/cime_config/namelist_definition_docn.xml
M       components/data_comps/drof/cime_config/buildnml
M       components/data_comps/drof/cime_config/namelist_definition_drof.xml
M       components/data_comps/dwav/cime_config/buildnml
M       driver_cpl/cime_config/buildnml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/cime_config/namelist_definition_drv.xml
M       driver_cpl/cime_config/namelist_definition_modelio.xml
M       scripts/Tools/case.build
M       scripts/Tools/case.setup
A       scripts/Tools/pelayout
M       scripts/Tools/xmlchange
M       scripts/Tools/xmlquery
M       scripts/create_test
M       scripts/manage_case
M       scripts/manage_pes
M       tools/mapping/map_field/README
M       utils/python/CIME/SystemTests/erp.py
M       utils/python/CIME/SystemTests/nck.py
M       utils/python/CIME/SystemTests/pea.py
M       utils/python/CIME/SystemTests/seq.py
M       utils/python/CIME/XML/component.py
M       utils/python/CIME/XML/entry_id.py
M       utils/python/CIME/XML/env_archive.py
M       utils/python/CIME/XML/env_base.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/XML/env_build.py
M       utils/python/CIME/XML/env_case.py
M       utils/python/CIME/XML/env_mach_pes.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/XML/env_run.py
M       utils/python/CIME/XML/env_test.py
M       utils/python/CIME/XML/generic_xml.py
M       utils/python/CIME/XML/namelist_definition.py
M       utils/python/CIME/XML/pes.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_run.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/case_submit.py
M       utils/python/CIME/get_timing.py
M       utils/python/CIME/namelist.py
M       utils/python/CIME/nmlgen.py
M       utils/python/CIME/preview_namelists.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/test_status.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py

======================================================================

======================================================================

Originator: Chris Fischer
Date: 12-23-2016
Tag: cime5.2.0-alpha.13.bhist
Answer Changes: None
Tests: prealpha pgi tests on hobart, BHIST restart on yellowstone

Dependencies:

Brief Summary: Fix pnetcdf module on hobart for pgi.  Update BHIST compset
names

User interface changes:

Modified files: git diff --name-status

        M       cime_config/cesm/allactive/config_compsets.xml
        M       cime_config/cesm/allactive/testlist_allactive.xml
        M       cime_config/cesm/machines/config_machines.xml

======================================================================

======================================================================

Originator: Jim Edwards
Date: 12-20-2016
Tag: cime5.2.0-alpha.13
Answer Changes: None
Tests: scripts_regression_tests, cesm2_0_alpha05b
Dependencies:

Brief Summary: fix nag and pgi compiler issues, refactor xmlquery tool,
	fix issues with dlnd buildnml

User interface changes: xmlquery options were changed

Modified files:
	M       cime_config/cesm/machines/config_compilers.xml
	M       components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
	M       driver_cpl/cime_config/config_component.xml
	M       scripts/Tools/xmlquery
	M       utils/python/CIME/XML/entry_id.py
	M       utils/python/CIME/XML/env_batch.py
	M       utils/python/CIME/XML/env_mach_specific.py
	M       utils/python/CIME/XML/generic_xml.py
	M       utils/python/CIME/buildnml.py
	M       utils/python/CIME/case.py
	M       utils/python/CIME/case_submit.py
	M       utils/python/CIME/preview_namelists.py
	M       utils/python/tests/CMakeLists.txt
	M       utils/python/tests/list_tests
	M       utils/python/tests/scripts_regression_tests.py


======================================================================

======================================================================

Originator: Jim Edwards
Date: 12-16-2016
Tag: cime5.2.0-alpha.12
Answer Changes: None
Tests: scripts_regression_tests, aux_clm40, aux_clm50
Dependencies:

Brief Summary: Fix for cori-haswell, critical namelist bug fix for datm

User interface changes:
	M       cime_config/cesm/machines/config_compilers.xml
	M       cime_config/cesm/machines/config_machines.xml
	M       components/data_comps/datm/cime_config/namelist_definition_datm.xml
	M       utils/python/CIME/check_input_data.py
	M       utils/python/tests/scripts_regression_tests.py


Modified files: git diff --name-status

======================================================================

======================================================================

Originator: Jim Edwards
Date: 12-15-2016
Tag: cime5.2.0-alpha.11
Answer Changes: None
Tests: scripts_regression_tests + various cesm system tests
Dependencies:

Brief Summary: fix debug flag attribute, clone issues, buildnml direct in python
	prevent a div by 0 in xmlchange, fix bless_test_results, move config_build to
	config_compilers, fix starchive issue, remove doc directory, redo buildnml in python
	datm updates, clm bld fix

User interface changes:

Modified files: git diff --name-status
	M       cime_config/acme/config_files.xml
M       cime_config/acme/machines/Makefile
D       cime_config/acme/machines/config_build.xml
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/acme/machines/config_machines.xml
M       cime_config/buildlib.gptl
M       cime_config/cesm/allactive/config_compsets.xml
M       cime_config/cesm/allactive/config_pes.xml
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/config_files.xml
M       cime_config/cesm/config_grids.xml
M       cime_config/cesm/machines/Makefile
M       cime_config/cesm/machines/config_batch.xml
D       cime_config/cesm/machines/config_build.xml
M       cime_config/cesm/machines/config_compilers.xml
M       cime_config/cesm/machines/config_machines.xml
D       cime_config/xml_schemas/config_build.xsd
A       cime_config/xml_schemas/config_compilers_v2.xsd
M       components/data_comps/datm/cime_config/buildnml
M       components/data_comps/datm/cime_config/config_component.xml
M       components/data_comps/datm/cime_config/namelist_definition_datm.xml
M       components/data_comps/dice/cime_config/buildnml
M       components/data_comps/dice/cime_config/namelist_definition_dice.xml
M       components/data_comps/dlnd/cime_config/buildnml
M       components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
M       components/data_comps/docn/cime_config/buildnml
M       components/data_comps/drof/cime_config/buildnml
M       components/data_comps/drof/cime_config/config_component.xml
M       components/data_comps/drof/cime_config/namelist_definition_drof.xml
M       components/data_comps/dwav/cime_config/buildnml
M       components/xcpl_comps/xatm/cime_config/buildnml
M       components/xcpl_comps/xglc/cime_config/buildnml
M       components/xcpl_comps/xice/cime_config/buildnml
M       components/xcpl_comps/xlnd/cime_config/buildnml
M       components/xcpl_comps/xocn/cime_config/buildnml
M       components/xcpl_comps/xrof/cime_config/buildnml
M       components/xcpl_comps/xwav/cime_config/buildnml
D       doc/
M       driver_cpl/cime_config/buildnml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/cime_config/namelist_definition_drv.xml
M       driver_cpl/driver/cesm_comp_mod.F90
M       driver_cpl/driver/seq_hist_mod.F90
M       driver_cpl/driver/seq_io_mod.F90
M       driver_cpl/shr/seq_flds_mod.F90
M       driver_cpl/shr/seq_infodata_mod.F90
M       externals/pio1/pio/pionfput_mod.F90.in
M       scripts/Tools/code_checker
M       scripts/Tools/compare_test_results
M       scripts/Tools/preview_namelists
M       scripts/query_testlists
M       share/csm_share/shr/shr_file_mod.F90
M       share/csm_share/shr/shr_strdata_mod.F90
M       share/timing/ChangeLog
M       share/timing/Makefile
M       share/timing/perf_mod.F90
M       tools/configure
M       tools/mapping/gen_mapping_files/runoff_to_ocn/src/map_mod.F90
M       tools/utils/find_circular_dependency.py
A       utils/python/CIME/BuildTools/__init__.py
A       utils/python/CIME/BuildTools/cmakemacroswriter.py
A       utils/python/CIME/BuildTools/configure.py
A       utils/python/CIME/BuildTools/macroconditiontree.py
A       utils/python/CIME/BuildTools/macrowriterbase.py
A       utils/python/CIME/BuildTools/makemacroswriter.py
A       utils/python/CIME/BuildTools/possiblevalues.py
A       utils/python/CIME/BuildTools/valuesetting.py
D       utils/python/CIME/XML/build.py
A       utils/python/CIME/XML/compilerblock.py
M       utils/python/CIME/XML/compilers.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/XML/generic_xml.py
M       utils/python/CIME/XML/grids.py
M       utils/python/CIME/XML/machines.py
M       utils/python/CIME/bless_test_results.py
M       utils/python/CIME/build.py
M       utils/python/CIME/buildnml.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_cmpgen_namelists.py
M       utils/python/CIME/case_run.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/case_st_archive.py
M       utils/python/CIME/case_submit.py
M       utils/python/CIME/compare_namelists.py
M       utils/python/CIME/compare_test_results.py
M       utils/python/CIME/get_timing.py
D       utils/python/CIME/macros_writers.py
M       utils/python/CIME/namelist.py
M       utils/python/CIME/nmlgen.py
M       utils/python/CIME/preview_namelists.py
M       utils/python/CIME/provenance.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/user_mod_support.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py
M       utils/python/update_acme_tests.py


======================================================================

======================================================================

Originator: Jim Edwards
Date: 11-28-2016
Tag: cime5.2.0-alpha.10
Answer Changes: Namelist compare changes expected
Tests: scripts_regression_tests + various cesm system tests
Dependencies:

Brief Summary: config_grids.xml refactor, add machines cori-haswell and cori-knl,
	remove CCSM_BASELINE variable - replaced with BASELINE_ROOT
	add error checks in xmlquery and xmlchange

User interface changes:

Modified files: git diff --name-status
M       cime_config/acme/allactive/config_pes.xml
M       cime_config/acme/allactive/config_pesall.xml
M       cime_config/acme/machines/config_batch.xml
M       cime_config/acme/machines/config_build.xml
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/acme/machines/config_machines.xml
M       cime_config/acme/machines/userdefined_laptop_template/config_machines.xml
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/config_archive.xml
M       cime_config/cesm/config_files.xml
M       cime_config/cesm/config_grids.xml
M       cime_config/cesm/machines/Makefile
M       cime_config/cesm/machines/config_batch.xml
M       cime_config/cesm/machines/config_machines.xml
M       cime_config/cesm/machines/userdefined_laptop_template/config_machines.xml
M       cime_config/config_tests.xml
A       cime_config/xml_schemas/config_grids_v2.xsd
M       components/data_comps/dlnd/cime_config/config_component.xml
M       driver_cpl/cime_config/config_component.xml
D       scripts/Testing/Testcases/NOC_script
M       scripts/Tools/bless_test_results
M       scripts/Tools/compare_test_results
M       scripts/Tools/xmlchange
M       scripts/Tools/xmlconvertors/config_pes_converter.py
M       scripts/Tools/xmlconvertors/grid_xml_converter.py
M       scripts/Tools/xmlquery
A       tools/utils/find_circular_dependency.py
M       utils/python/CIME/SystemTests/erio.py
M       utils/python/CIME/SystemTests/homme.py
D       utils/python/CIME/SystemTests/noc.py
M       utils/python/CIME/XML/component.py
M       utils/python/CIME/XML/entry_id.py
M       utils/python/CIME/XML/generic_xml.py
M       utils/python/CIME/XML/grids.py
M       utils/python/CIME/bless_test_results.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_st_archive.py
M       utils/python/CIME/preview_namelists.py
M       utils/python/CIME/provenance.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py
======================================================================

======================================================================

Originator: Jim Edwards
Date: 11-10-2016
Tag: cime5.2.0-alpha.9
Answer Changes: None
Tests: script_regression_tests
Dependencies:

Brief Summary:port to updated cori and new laramie systems, erio test and gmake fix.

User interface changes:

Modified files: git diff --name-status
A       cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/shell_commands
D       cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/xmlchange_cmnds
A       cime_config/acme/allactive/testmods_dirs/force_netcdf_pio/shell_commands
D       cime_config/acme/allactive/testmods_dirs/force_netcdf_pio/xmlchange_cmnds
M       cime_config/acme/config_archive.xml
M       cime_config/acme/machines/config_batch.xml
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/acme/machines/config_machines.xml
M       cime_config/buildlib.pio
M       cime_config/cesm/allactive/config_compsets.xml
M       cime_config/cesm/allactive/testlist_allactive.xml
A       cime_config/cesm/allactive/testmods_dirs/allactive/cism/oneway/shell_commands
D       cime_config/cesm/allactive/testmods_dirs/allactive/cism/oneway/xmlchange_cmnds
M       cime_config/cesm/config_archive.xml
M       cime_config/cesm/machines/config_batch.xml
M       cime_config/cesm/machines/config_compilers.xml
M       cime_config/cesm/machines/config_machines.xml
M       cime_config/cesm/machines/config_pio.xml
M       driver_cpl/cime_config/buildexe
M       driver_cpl/cime_config/config_component.xml
M       scripts/Tools/compare_test_results
M       share/csm_share/shr/shr_strdata_mod.F90
M       tools/cprnc/summarize_cprnc_diffs
M       utils/python/CIME/SystemTests/erio.py
M       utils/python/CIME/SystemTests/homme.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/build.py
M       utils/python/CIME/buildlib.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_st_archive.py
M       utils/python/CIME/case_test.py
M       utils/python/CIME/compare_test_results.py
M       utils/python/CIME/hist_utils.py
M       utils/python/CIME/nmlgen.py
M       utils/python/CIME/preview_namelists.py
M       utils/python/CIME/user_mod_support.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 11-02-2016
Tag: cime5.2.0-alpha.8
Answer Changes: None
Tests: scripts_regression_tests problem specific tests
Dependencies:

Brief Summary: improved build logging, --output-root option, fix issues with user_mods,
	fix pea test, update laramie, testreporter fixes

User interface changes:
M       cime_config/acme/machines/Makefile
M       cime_config/acme/machines/config_batch.xml
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/acme/machines/config_machines.xml
M       cime_config/acme/machines/userdefined_laptop_template/config_machines.xml
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/machines/Makefile
M       cime_config/cesm/machines/config_batch.xml
M       cime_config/cesm/machines/config_machines.xml
M       cime_config/cesm/machines/userdefined_laptop_template/config_machines.xml
M       cime_config/config_tests.xml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/driver/cesm_comp_mod.F90
M       scripts/Testing/testreporter.pl
M       scripts/Tools/bless_test_results
M       scripts/Tools/case.cmpgen_namelists
M       scripts/Tools/cime_bisect
M       scripts/Tools/compare_test_results
M       scripts/Tools/jenkins_generic_job
M       scripts/create_newcase
M       scripts/create_test
M       utils/perl5lib/Config/SetupTools.pm
A       utils/python/CIME/SystemTests/erio.py
M       utils/python/CIME/SystemTests/system_tests_common.py
M       utils/python/CIME/XML/entry_id.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_cmpgen_namelists.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/preview_namelists.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/user_mod_support.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py
M       utils/python/update_acme_tests.py


Modified files: git diff --name-status

======================================================================

======================================================================

Originator: Jim Edwards
Date: 10-27-2016
Tag: cime5.2.0-alpha.7
Answer Changes: None
Tests: scripts_regression_tests problem specific tests
Dependencies:

Brief Summary: backout change to xmlchange command , fix ERP and ERI and DAE tests

User interface changes:

Modified files: git diff --name-status
M       cime_config/acme/machines/config_machines.xml
M       cime_config/cesm/machines/config_batch.xml
M       cime_config/config_tests.xml
M       scripts/Tools/code_checker
M       scripts/Tools/xmlchange
M       utils/python/CIME/SystemTests/erp.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/tests/scripts_regression_tests.py
======================================================================

======================================================================

Originator: Jim Edwards
Date: 10-26-2016
Tag: cime5.2.0-alpha.6
Answer Changes: None
Tests: scripts_regression_tests, problem specific tests
Dependencies:

Brief Summary: Fix for ERP tests, Fix for shr_scam_mod, indentation in cs.status
			   Fix for testmods recurrsion, pylint testing extended
User interface changes: none

Modified files: git diff --name-status
M       cime_config/acme/machines/config_machines.xml
M       cime_config/buildlib.pio
M       scripts/Tools/bless_test_results
M       scripts/Tools/case.build
M       scripts/Tools/case.cmpgen_namelists
M       scripts/Tools/check_case
M       scripts/Tools/check_input_data
M       scripts/Tools/cime_bisect
M       scripts/Tools/cimeteststatus
M       scripts/Tools/code_checker
M       scripts/Tools/compare_test_results
D       scripts/Tools/config_pes_converter.py
M       scripts/Tools/cs_status
D       scripts/Tools/grid_xml_converter.py
M       scripts/Tools/jenkins_generic_job
M       scripts/Tools/standard_script_setup.py
M       scripts/Tools/update_acme_tests
M       scripts/Tools/xmlchange
A       scripts/Tools/xmlconvertors/config_pes_converter.py
A       scripts/Tools/xmlconvertors/grid_xml_converter.py
M       scripts/Tools/xmlquery
M       share/csm_share/shr/shr_scam_mod.F90
M       tools/cprnc/summarize_cprnc_diffs
M       utils/python/CIME/SystemTests/erp.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/XML/generic_xml.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/test_status.py
M       utils/python/CIME/user_mod_support.py
M       utils/python/tests/scripts_regression_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 10-24-2016
Tag: cime5.2.0-alpha.5
Answer Changes: None
Tests: scripts_regression_tests, aux_clm45, others
Dependencies:

Brief Summary:

User interface changes: changes when preview_namelists is run, first in case.build and less frequently overall
Changes where sharedlib builds are installed to avoid conflicts in builds

Modified files: git diff --name-status
M       cime_config/acme/machines/Makefile
D       cime_config/acme/machines/buildlib.csm_share
D       cime_config/acme/machines/buildlib.gptl
D       cime_config/acme/machines/buildlib.mct
D       cime_config/acme/machines/buildlib.pio
A       cime_config/buildlib.csm_share
A       cime_config/buildlib.gptl
A       cime_config/buildlib.mct
A       cime_config/buildlib.pio
M       cime_config/cesm/allactive/config_compsets.xml
M       cime_config/cesm/machines/Makefile
D       cime_config/cesm/machines/buildlib.csm_share
D       cime_config/cesm/machines/buildlib.gptl
D       cime_config/cesm/machines/buildlib.mct
D       cime_config/cesm/machines/buildlib.pio
M       cime_config/cesm/machines/config_machines.xml
M       components/data_comps/datm/cime_config/config_component.xml
M       components/data_comps/datm/cime_config/namelist_definition_datm.xml
M       components/data_comps/datm/datm_comp_mod.F90
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/driver/CMakeLists.txt
A       driver_cpl/driver/map_lnd2rof_irrig_mod.F90
M       driver_cpl/driver/prep_lnd_mod.F90
M       driver_cpl/driver/prep_ocn_mod.F90
M       driver_cpl/driver/prep_rof_mod.F90
M       driver_cpl/driver/seq_diag_mct.F90
M       driver_cpl/shr/seq_flds_mod.F90
M       driver_cpl/unit_test/CMakeLists.txt
A       driver_cpl/unit_test/map_lnd2rof_irrig_test/CMakeLists.txt
A       driver_cpl/unit_test/map_lnd2rof_irrig_test/test_map_lnd2rof_irrig.pf
A       scripts/Tools/case.cmpgen_namelists
M       scripts/Tools/code_checker
M       scripts/Tools/compare_namelists
M       scripts/Tools/preview_namelists
M       scripts/Tools/simple_compare
M       share/csm_share/shr/shr_pio_mod.F90
M       share/csm_share/test/unit/shr_string_test/test_shr_string.pf
M       share/csm_share/unit_test_stubs/pio/CMakeLists.txt
D       share/csm_share/unit_test_stubs/pio/do_genf90
D       share/csm_share/unit_test_stubs/pio/pio.F90
M       share/csm_share/unit_test_stubs/pio/pio.F90.in
M       utils/python/CIME/XML/entry_id.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case.py
A       utils/python/CIME/case_cmpgen_namelists.py
M       utils/python/CIME/case_run.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/case_submit.py
M       utils/python/CIME/compare_namelists.py
M       utils/python/CIME/preview_namelists.py
M       utils/python/CIME/simple_compare.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/test_status.py
M       utils/python/CIME/utils.py
M       utils/python/tests/list_tests
M       utils/python/tests/scripts_regression_tests.py
M       utils/python/update_acme_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 10-14-2016
Tag: cime5.2.0-alpha.4
Answer Changes: None
Tests: scripts_regression_tests, aux_clm4, cesm prealpha
Dependencies:

Brief Summary: Bring the driver and data model build namelists into python,
	add xml schema checks for config_component and namelist_definition files

User interface changes: data model build namelists now in python

Modified files: git diff --name-status
M       cime_config/acme/config_grids.xml
D       cime_config/acme/machines/ccsm_getenv
M       cime_config/acme/machines/config_batch.xml
M       cime_config/acme/machines/config_machines.xml
D       cime_config/acme/machines/configure
D       cime_config/acme/machines/template.tseries_generate.pl
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/config_files.xml
M       cime_config/cesm/config_grids.xml
M       cime_config/cesm/machines/config_batch.xml
M       cime_config/cesm/machines/config_machines.xml
M       cime_config/cesm/machines/template.case.run
M       cime_config/cesm/machines/template.lt_archive
M       cime_config/cesm/machines/template.st_archive
M       cime_config/config_tests.xml
A       cime_config/xml_schemas/entry_id.xsd
A       cime_config/xml_schemas/entry_id_base.xsd
A       cime_config/xml_schemas/entry_id_namelist.xsd
D       components/data_comps/datm/atm_comp_esmf.F90
D       components/data_comps/datm/bld/build-namelist
D       components/data_comps/datm/bld/namelist_files/namelist_defaults.xsl
D       components/data_comps/datm/bld/namelist_files/namelist_defaults_datm.xml
D       components/data_comps/datm/bld/namelist_files/namelist_definition.xsl
D       components/data_comps/datm/bld/namelist_files/namelist_definition_datm.xml
D       components/data_comps/datm/bld/unit_testers/build-namelist_test.pl
D       components/data_comps/datm/bld/unit_testers/env_run.xml
D       components/data_comps/datm/bld/unit_testers/user_xml_dir/namelist_defaults_datm.xml
D       components/data_comps/datm/bld/unit_testers/user_xml_dir/namelist_definition_datm.xml
M       components/data_comps/datm/cime_config/buildlib
M       components/data_comps/datm/cime_config/buildnml
M       components/data_comps/datm/cime_config/config_component.xml
A       components/data_comps/datm/cime_config/namelist_definition_datm.xml
M       components/data_comps/datm/datm_comp_mod.F90
D       components/data_comps/dice/bld/build-namelist
D       components/data_comps/dice/bld/namelist_files/namelist_defaults_dice.xml
D       components/data_comps/dice/bld/namelist_files/namelist_definition_dice.xml
M       components/data_comps/dice/cime_config/buildlib
M       components/data_comps/dice/cime_config/buildnml
M       components/data_comps/dice/cime_config/config_component.xml
A       components/data_comps/dice/cime_config/namelist_definition_dice.xml
M       components/data_comps/dice/dice_comp_mod.F90
D       components/data_comps/dice/ice_comp_esmf.F90
D       components/data_comps/dlnd/bld/build-namelist
D       components/data_comps/dlnd/bld/namelist_files/namelist_defaults_dlnd.xml
D       components/data_comps/dlnd/bld/namelist_files/namelist_definition_dlnd.xml
M       components/data_comps/dlnd/cime_config/buildlib
M       components/data_comps/dlnd/cime_config/buildnml
M       components/data_comps/dlnd/cime_config/config_component.xml
A       components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
M       components/data_comps/dlnd/dlnd_comp_mod.F90
D       components/data_comps/dlnd/lnd_comp_esmf.F90
D       components/data_comps/docn/bld/build-namelist
D       components/data_comps/docn/bld/namelist_files/namelist_defaults_docn.xml
D       components/data_comps/docn/bld/namelist_files/namelist_definition_docn.xml
M       components/data_comps/docn/cime_config/buildlib
M       components/data_comps/docn/cime_config/buildnml
M       components/data_comps/docn/cime_config/config_component.xml
A       components/data_comps/docn/cime_config/namelist_definition_docn.xml
M       components/data_comps/docn/docn_comp_mod.F90
D       components/data_comps/docn/ocn_comp_esmf.F90
D       components/data_comps/drof/bld/build-namelist
D       components/data_comps/drof/bld/namelist_files/namelist_defaults_drof.xml
D       components/data_comps/drof/bld/namelist_files/namelist_definition_drof.xml
M       components/data_comps/drof/cime_config/buildlib
M       components/data_comps/drof/cime_config/buildnml
M       components/data_comps/drof/cime_config/config_component.xml
A       components/data_comps/drof/cime_config/namelist_definition_drof.xml
M       components/data_comps/drof/drof_comp_mod.F90
D       components/data_comps/drof/rof_comp_esmf.F90
D       components/data_comps/dwav/bld/build-namelist
D       components/data_comps/dwav/bld/namelist_files/namelist_defaults_dwav.xml
D       components/data_comps/dwav/bld/namelist_files/namelist_definition_dwav.xml
M       components/data_comps/dwav/cime_config/buildlib
M       components/data_comps/dwav/cime_config/buildnml
M       components/data_comps/dwav/cime_config/config_component.xml
A       components/data_comps/dwav/cime_config/namelist_definition_dwav.xml
M       components/data_comps/dwav/dwav_comp_mod.F90
M       components/stub_comps/satm/cime_config/buildlib
M       components/stub_comps/satm/cime_config/config_component.xml
M       components/stub_comps/sesp/cime_config/buildlib
M       components/stub_comps/sesp/cime_config/config_component.xml
M       components/stub_comps/sglc/cime_config/buildlib
M       components/stub_comps/sglc/cime_config/config_component.xml
M       components/stub_comps/sice/cime_config/buildlib
M       components/stub_comps/sice/cime_config/config_component.xml
M       components/stub_comps/slnd/cime_config/buildlib
M       components/stub_comps/slnd/cime_config/config_component.xml
M       components/stub_comps/socn/cime_config/buildlib
M       components/stub_comps/socn/cime_config/config_component.xml
M       components/stub_comps/srof/cime_config/buildlib
M       components/stub_comps/srof/cime_config/config_component.xml
M       components/stub_comps/swav/cime_config/buildlib
M       components/stub_comps/swav/cime_config/config_component.xml
M       components/xcpl_comps/xatm/cime_config/buildlib
M       components/xcpl_comps/xatm/cime_config/buildnml
M       components/xcpl_comps/xatm/cime_config/config_component.xml
M       components/xcpl_comps/xglc/cime_config/buildlib
M       components/xcpl_comps/xglc/cime_config/buildnml
M       components/xcpl_comps/xglc/cime_config/config_component.xml
M       components/xcpl_comps/xice/cime_config/buildlib
M       components/xcpl_comps/xice/cime_config/buildnml
M       components/xcpl_comps/xice/cime_config/config_component.xml
M       components/xcpl_comps/xlnd/cime_config/buildlib
M       components/xcpl_comps/xlnd/cime_config/buildnml
M       components/xcpl_comps/xlnd/cime_config/config_component.xml
M       components/xcpl_comps/xocn/cime_config/buildlib
M       components/xcpl_comps/xocn/cime_config/buildnml
M       components/xcpl_comps/xocn/cime_config/config_component.xml
M       components/xcpl_comps/xrof/cime_config/buildlib
M       components/xcpl_comps/xrof/cime_config/buildnml
M       components/xcpl_comps/xrof/cime_config/config_component.xml
M       components/xcpl_comps/xwav/cime_config/buildlib
M       components/xcpl_comps/xwav/cime_config/buildnml
M       components/xcpl_comps/xwav/cime_config/config_component.xml
D       driver_cpl/bld/build-namelist
M       driver_cpl/bld/namelist_files/namelist_defaults_drv.xml
M       driver_cpl/bld/namelist_files/namelist_definition_drv.xml
M       driver_cpl/bld/namelist_files/namelist_definition_drv_flds.xml
M       driver_cpl/cime_config/buildexe
M       driver_cpl/cime_config/buildnml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/cime_config/config_compsets.xml
A       driver_cpl/cime_config/namelist_definition_drv.xml
A       driver_cpl/cime_config/namelist_definition_modelio.xml
M       driver_cpl/driver/prep_ocn_mod.F90
M       driver_cpl/shr/seq_drydep_mod.F90
M       externals/pio2/src/flib/pio.F90
M       externals/pio2/src/flib/pio_types.F90
M       scripts/Testing/testreporter.pl
M       scripts/Tools/code_checker
M       scripts/Tools/standard_script_setup.py
M       scripts/Tools/xmlquery
M       scripts/create_clone
M       scripts/create_newcase
M       scripts/create_test
M       scripts/manage_case
M       scripts/manage_pes
M       scripts/query_testlists
M       share/csm_share/shr/shr_pio_mod.F90
M       share/csm_share/shr/shr_strdata_mod.F90
M       share/csm_share/shr/shr_stream_mod.F90
M       tools/configure
D       tools/system_tests/configure.test/configtest.pl
D       utils/perl5lib/Streams/TemplateGeneric.pm
M       utils/python/CIME/SystemTests/nck.py
M       utils/python/CIME/SystemTests/pea.py
M       utils/python/CIME/SystemTests/pem.py
M       utils/python/CIME/SystemTests/seq.py
M       utils/python/CIME/SystemTests/system_tests_common.py
M       utils/python/CIME/XML/component.py
M       utils/python/CIME/XML/entry_id.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/XML/files.py
M       utils/python/CIME/XML/generic_xml.py
M       utils/python/CIME/XML/grids.py
A       utils/python/CIME/XML/namelist_definition.py
M       utils/python/CIME/XML/testlist.py
M       utils/python/CIME/XML/testspec.py
M       utils/python/CIME/build.py
M       utils/python/CIME/buildnml.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_run.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/case_submit.py
M       utils/python/CIME/compare_namelists.py
M       utils/python/CIME/get_timing.py
M       utils/python/CIME/hist_utils.py
A       utils/python/CIME/namelist.py
A       utils/python/CIME/nmlgen.py
M       utils/python/CIME/provenance.py
M       utils/python/CIME/simple_compare.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/test_status.py
M       utils/python/CIME/test_utils.py
M       utils/python/CIME/tests/SystemTests/test_system_tests_compare_two.py
M       utils/python/CIME/utils.py
M       utils/python/CIME/wait_for_tests.py
M       utils/python/tests/CTestConfig.cmake
M       utils/python/tests/scripts_regression_tests.py
M       utils/python/update_acme_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 10-04-2016
Tag: cime5.2.0-alpha.3
Answer Changes: None
Tests:  scripts_regression_tests
Dependencies:

Brief Summary: updates based on cesm2_0_beta02 testing, add memleak_tolerance check, better TestStatus for incomplete tests. new query_testlist feature.

User interface changes:

Modified files: git diff --name-status
M       cime_config/acme/allactive/config_pesall.xml
M       cime_config/acme/config_archive.xml
M       cime_config/acme/config_files.xml
M       cime_config/acme/machines/config_batch.xml
M       cime_config/acme/machines/config_build.xml
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/acme/machines/config_machines.xml
D       cime_config/acme/machines/env_mach_specific.penn
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/config_archive.xml
M       cime_config/cesm/config_files.xml
M       cime_config/cesm/machines/config_batch.xml
M       cime_config/config_tests.xml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/cime_config/testdefs/testlist_drv.xml
M       externals/pio2/src/clib/pioc.c
M       scripts/create_test
A       scripts/query_testlists
D       tools/cprnc/CMake/FindNetcdf.cmake
M       tools/cprnc/CMakeLists.txt
M       tools/cprnc/README
M       utils/python/CIME/SystemTests/erp.py
M       utils/python/CIME/SystemTests/system_tests_common.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/XML/generic_xml.py
M       utils/python/CIME/XML/lt_archive.py
M       utils/python/CIME/XML/testlist.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/hist_utils.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/test_status.py
M       utils/python/CIME/test_utils.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py

======================================================================

Originator: Jim Edwards
Date: 09-27-2016
Tag: cime5.2.0-alpha01
Answer Changes: None
Tests: scripts_regression_tests
Dependencies: None

Brief Summary: Bug fixes related to cesm2_0_beta02 testing, EBM liquid and ice mapping files seperated, RASM bug fix

User interface changes: none

Modified files: git diff --name-status
M       cime_config/acme/config_archive.xml
M       cime_config/acme/machines/buildlib.csm_share
M       cime_config/acme/machines/config_batch.xml
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/acme/machines/config_machines.xml
M       cime_config/acme/machines/config_pio.xml
M       cime_config/cesm/machines/config_batch.xml
M       cime_config/cesm/machines/config_machines.xml
M       cime_config/config_tests.xml
M       driver_cpl/bld/build-namelist
M       driver_cpl/bld/namelist_files/namelist_definition_drv.xml
M       driver_cpl/cime_config/buildnml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/driver/cesm_comp_mod.F90
M       driver_cpl/driver/seq_diag_mct.F90
M       driver_cpl/shr/seq_flds_mod.F90
M       driver_cpl/shr/seq_infodata_mod.F90
M       scripts/Tools/cs_status
D       scripts/Tools/taskmaker
M       scripts/Tools/xmlquery
M       scripts/create_test
A       utils/data_assimilation/da_no_data_mod.sh
A       utils/python/CIME/SystemTests/dae.py
M       utils/python/CIME/SystemTests/eri.py
M       utils/python/CIME/SystemTests/pet.py
M       utils/python/CIME/SystemTests/pfs.py
M       utils/python/CIME/XML/entry_id.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/XML/env_mach_pes.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/XML/generic_xml.py
M       utils/python/CIME/XML/machines.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_run.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/check_input_data.py
D       utils/python/CIME/task_maker.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/test_status.py
M       utils/python/tests/scripts_regression_tests.py
M       utils/python/update_acme_tests.py



======================================================================

======================================================================

Originator: Jim Edwards
Date: 09-08-2016
Tag: cime5.0.11
Answer Changes: None
Tests: scripts_regression_tests, problem related testing
Dependencies: none

Brief Summary: Fixes issues found in cime5.0.10
	Change DOUT_S default for cesm
	Fix cost_estimate for timing tables
	Fix issue with task count for archive tools
	Restore MASK_GRID xml variable
	Fix issues with user_mods path
	add provenance save capabilities for acme


User interface changes:

Modified files: git diff --name-status
M       cime_config/acme/allactive/config_pes.xml.cime2
M       cime_config/acme/allactive/config_pesall.xml
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/acme/machines/config_machines.xml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/cime_config/config_compsets.xml
M       scripts/Tools/code_checker
M       scripts/Tools/getTiming
A       scripts/Tools/save_provenance
M       utils/python/CIME/SystemTests/ssp.py
M       utils/python/CIME/SystemTests/system_tests_common.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/XML/grids.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_run.py
M       utils/python/CIME/case_setup.py
A       utils/python/CIME/get_timing.py
M       utils/python/CIME/hist_utils.py
A       utils/python/CIME/provenance.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/user_mod_support.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: 08-31-2016
Tag: cime5.0.9
Answer Changes: None
Tests: scripts_regression_tests, several multiinstance and component tests
Dependencies:

Brief Summary: Fix a host of issues related to testing, remove remaining
	esmf code, update pio externals,

User interface changes: add --allow-baseline-overwrite flag

Modified files: git diff --name-status
M       cime_config/acme/config_files.xml
M       cime_config/acme/machines/config_batch.xml
M       cime_config/acme/machines/config_machines.xml
M       cime_config/cesm/config_archive.xml
M       cime_config/cesm/config_files.xml
M       cime_config/cesm/machines/config_batch.xml
M       cime_config/cesm/machines/config_build.xml
M       cime_config/cesm/machines/config_compilers.xml
M       cime_config/cesm/machines/config_machines.xml
M       cime_config/cesm/machines/config_pio.xml
A       cime_config/config_tests.xml
M       cime_config/xml_schemas/archive.xsd
M       components/data_comps/dice/bld/build-namelist
D       components/stub_comps/satm/cpl/atm_comp_esmf.F90
D       components/stub_comps/sesp/cpl/esp_comp_esmf.F90
D       components/stub_comps/sglc/cpl/glc_comp_esmf.F90
D       components/stub_comps/sice/cpl/ice_comp_esmf.F90
D       components/stub_comps/slnd/cpl/lnd_comp_esmf.F90
D       components/stub_comps/socn/cpl/ocn_comp_esmf.F90
D       components/stub_comps/srof/cpl/rof_comp_esmf.F90
D       components/stub_comps/swav/cpl/wav_comp_esmf.F90
D       components/xcpl_comps/xatm/cpl/atm_comp_esmf.F90
D       components/xcpl_comps/xglc/cpl/glc_comp_esmf.F90
D       components/xcpl_comps/xice/cpl/ice_comp_esmf.F90
D       components/xcpl_comps/xlnd/cpl/lnd_comp_esmf.F90
D       components/xcpl_comps/xocn/cpl/ocn_comp_esmf.F90
D       components/xcpl_comps/xrof/cpl/rof_comp_esmf.F90
D       components/xcpl_comps/xwav/cpl/wav_comp_esmf.F90
M       driver_cpl/bld/build-namelist
M       driver_cpl/bld/namelist_files/namelist_defaults_drv.xml
M       driver_cpl/bld/namelist_files/namelist_definition_drv.xml
M       driver_cpl/cime_config/config_component.xml
M       externals/pio1/pio/box_rearrange.F90.in
M       externals/pio1/pio/pio_types.F90
M       externals/pio1/pio/piolib_mod.F90
M       externals/pio2/CMakeLists.txt
M       externals/pio2/ctest/CTestEnvironment-nwsc.cmake
M       externals/pio2/ctest/runcdash-cgd-nag.sh
M       externals/pio2/ctest/runctest-cgd.sh
M       externals/pio2/doc/CMakeLists.txt
M       externals/pio2/doc/Doxyfile.in
M       externals/pio2/doc/source/Error.txt
M       externals/pio2/doc/source/Examples.txt
M       externals/pio2/doc/source/Installing.txt
A       externals/pio2/doc/source/Testing.txt
M       externals/pio2/doc/source/base.txt
M       externals/pio2/doc/source/mach_walkthrough.txt
M       externals/pio2/examples/c/example2.c
A       externals/pio2/examples/c/valsupp_example1.supp
M       externals/pio2/examples/f03/examplePio.f90
M       externals/pio2/src/clib/CMakeLists.txt
M       externals/pio2/src/clib/bget.c
M       externals/pio2/src/clib/config.h.in
M       externals/pio2/src/clib/pio.h
M       externals/pio2/src/clib/pio_darray.c
A       externals/pio2/src/clib/pio_darray_async.c
M       externals/pio2/src/clib/pio_file.c
A       externals/pio2/src/clib/pio_get_nc_async.c
M       externals/pio2/src/clib/pio_internal.h
M       externals/pio2/src/clib/pio_lists.c
A       externals/pio2/src/clib/pio_msg.c
M       externals/pio2/src/clib/pio_nc.c
M       externals/pio2/src/clib/pio_nc4.c
A       externals/pio2/src/clib/pio_nc_async.c
A       externals/pio2/src/clib/pio_put_nc_async.c
A       externals/pio2/src/clib/pio_varm.c
M       externals/pio2/src/clib/pioc.c
M       externals/pio2/src/clib/pioc_support.c
M       externals/pio2/src/flib/pio.F90
M       externals/pio2/src/flib/pio_nf.F90
M       externals/pio2/src/gptl/perf_mod.F90
A       externals/pio2/tests/performance/kt.PIO1.perfmakefile
M       externals/pio2/tests/performance/pioperformance.F90
M       externals/pio2/tests/unit/CMakeLists.txt
M       externals/pio2/tests/unit/basic_tests.F90
M       externals/pio2/tests/unit/driver.F90
A       externals/pio2/tests/unit/test_darray.c
A       externals/pio2/tests/unit/test_darray_async.c
A       externals/pio2/tests/unit/test_intercomm.c
A       externals/pio2/tests/unit/test_names.c
M       externals/pio2/tests/unit/test_nc4.c
M       scripts/Testing/Testcases/NOC_script
D       scripts/Testing/Testcases/config_tests.xml
M       scripts/Testing/testreporter.pl
D       scripts/Tools/baseline_gen_comp
M       scripts/Tools/bless_test_results
M       scripts/Tools/case.build
A       scripts/Tools/compare_test_results
D       scripts/Tools/component_compare.sh
A       scripts/Tools/component_compare_baseline
A       scripts/Tools/component_compare_move
D       scripts/Tools/component_compare_move.sh
A       scripts/Tools/component_compare_test
D       scripts/Tools/component_compare_test.sh
D       scripts/Tools/component_compgen_baseline.sh
D       scripts/Tools/component_generate.sh
A       scripts/Tools/component_generate_baseline
M       scripts/Tools/xmlchange
M       scripts/create_newcase
M       scripts/create_test
M       scripts/manage_case
M       share/csm_share/shr/shr_pio_mod.F90
M       tools/configure
M       tools/cprnc/README
M       tools/cprnc/compare_vars_mod.F90.in
M       utils/perl5lib/Streams/TemplateGeneric.pm
M       utils/python/CIME/SystemTests/README
M       utils/python/CIME/SystemTests/eri.py
M       utils/python/CIME/SystemTests/err.py
M       utils/python/CIME/SystemTests/lii.py
M       utils/python/CIME/SystemTests/nck.py
M       utils/python/CIME/SystemTests/pea.py
M       utils/python/CIME/SystemTests/pet.py
A       utils/python/CIME/SystemTests/rep.py
M       utils/python/CIME/SystemTests/ssp.py
M       utils/python/CIME/SystemTests/system_tests_common.py
A       utils/python/CIME/SystemTests/system_tests_compare_two.py
A       utils/python/CIME/SystemTests/test_utils/__init__.py
A       utils/python/CIME/SystemTests/test_utils/user_nl_utils.py
M       utils/python/CIME/XML/batch.py
A       utils/python/CIME/XML/build.py
M       utils/python/CIME/XML/compilers.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/XML/machines.py
M       utils/python/CIME/XML/pes.py
M       utils/python/CIME/bless_test_results.py
M       utils/python/CIME/buildnml.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_run.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/case_test.py
M       utils/python/CIME/check_lockedfiles.py
M       utils/python/CIME/compare_namelists.py
A       utils/python/CIME/compare_test_results.py
A       utils/python/CIME/hist_utils.py
D       utils/python/CIME/macros.py
M       utils/python/CIME/preview_namelists.py
M       utils/python/CIME/test_scheduler.py
M       utils/python/CIME/test_status.py
A       utils/python/CIME/tests/README
A       utils/python/CIME/tests/SystemTests/__init__.py
A       utils/python/CIME/tests/SystemTests/test_system_tests_compare_two.py
A       utils/python/CIME/tests/SystemTests/test_system_tests_compare_two_link_to_case2_output.py
A       utils/python/CIME/tests/SystemTests/test_utils/__init__.py
A       utils/python/CIME/tests/SystemTests/test_utils/test_user_nl_utils.py
A       utils/python/CIME/tests/__init__.py
A       utils/python/CIME/tests/case_fake.py
A       utils/python/CIME/tests/test_case_fake.py
M       utils/python/CIME/utils.py
M       utils/python/jenkins_generic_job.py
M       utils/python/tests/scripts_regression_tests.py
M       utils/python/update_acme_tests.py

======================================================================


======================================================================

Originator: Jim Edwards
Date: Aug 11, 2012
Tag: cime5.0.8
Answer Changes: None
Tests: scripts_regression_tests,
Dependencies:

Brief Summary: fix error in taskmaker task counter,
	add error code for component_compare_test,
	fix unit test for run_cmd
	improve cime_bisect tool
	add back software_environement.txt


User interface changes:

Modified files: git diff --name-status
M       cime_config/acme/config_files.xml
D       scripts/Testing/Testcases/HOMME_script
M       scripts/Tools/cime_bisect
M       scripts/Tools/component_compare_test.sh
A       utils/python/CIME/SystemTests/homme.py
M       utils/python/CIME/SystemTests/system_tests_common.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/task_maker.py
M       utils/python/CIME/utils.py
M       utils/python/update_acme_tests.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: Aug 10, 2016
Tag: cime5.0.7
Answer Changes: None
Tests: None
Dependencies:

Brief Summary: Comment out code added in PR 337 until it works for tcsh and csh users

User interface changes:

Modified files: git diff --name-status
	utils/python/CIME/case_setup.py

======================================================================

======================================================================

Originator: Jim Edwards
Date: Aug 10, 2016
Tag: cime5.0.6
Answer Changes: None
Tests: scripts_regression_tests - others run for specific updates
Dependencies: None

Brief Summary:
d083933 (mydev/user_mod_0len_fix, user_mod_0len_fix) user_nl_ file was being removed if a user_nl file in any mods directory was missing
39de940 Fix comment
0773aac Increase default walltime for blues
c4dce0f Remove last uses of taskmaker.pl
76eb1bc Remove -A directive from edison
c9b8910 Seperate out modelio namelist definition since it uses the same names, but defines them differently
805ad7f Add -mismatch_all when compiling cism with nag
fff9a9b (origin/jgfouca/minor_timing_chg) Set CHECK_TIMING to true in addition to SAVE_TIMING if --save-timing given to create_test
f25a518 (origin/jgfouca/wait_for_test_refactor) wait_for_tests will now always specifically wait for the RUN phase
e19e72c Update drv buildnamelist test to work with cime5
893c6c6 Add support for LANL's mustang and wolf to cime
c103e08 (origin/rljacob/machines/fix-acme) Add SAVE_TIMING_DIR for edison
84000ee Fixing the runjob command for ACME on Mira
1a55232 Adding config for ERS_Ld3.ne30_g16_rx1.A test
d1df346 Error handling; check for correct length of key-value pair array after split
fa1cb49 listofsettings allways an array, test for length of array
a6a3d33 Changed number of expected positional arguments to 0 or 1 , warnings and debug statements
74d2100 checking for missing values in settings string from command line
cd350da (origin/santos/fix-env-leakage) Remove `GenericXML` check for env variables.
43807a5 Add white space after batch directives in script templates
edc1671 Autosave environment information in case_setup.
c3f8f84 (origin/jgfouca/fix_create_test_not_catching_missing_project) create_test was not failing the create_newcase phase when project info was missing
731f8a0 (origin/jgfouca/add_queue_option_to_create_test) Add ability to select queue to create_test and create_newcase
11877a2 (origin/jgfouca/even_more_sky_env_fixes) Fix mismatch between MPI_PATH and the mpi module being loaded
0268cb7 Only report present files in debug mode
47b4216 Fix spelling mistake
07aeb52 Get cime_developer building again on skybridge.
d8f331c moved batchdirectives to top of the template
dbbd3a1 Users should get a nice error when their python is too old
ca3e004 Fix skybridge environment problems, port to new SEMS modules
e266dd9 Remove sentinel concept from jenkins_generic_job


User interface changes: None

Modified files: git diff --name-status
M       cime_config/acme/allactive/config_pesall.xml
M       cime_config/acme/machines/config_batch.xml
M       cime_config/acme/machines/config_compilers.xml
M       cime_config/acme/machines/config_machines.xml
D       cime_config/acme/machines/env_mach_specific.melvin
D       cime_config/acme/machines/env_mach_specific.redsky
D       cime_config/acme/machines/env_mach_specific.skybridge
D       cime_config/acme/machines/taskmaker.pl
M       cime_config/acme/machines/template.case.run
M       cime_config/acme/machines/template.case.test
M       cime_config/acme/machines/template.lt_archive
M       cime_config/acme/machines/template.ocn_diagnostics
M       cime_config/acme/machines/template.st_archive
M       cime_config/acme/machines/template.timeseries
M       cime_config/acme/machines/template.tseries_generate.pl
D       cime_config/acme/machines/userdefined_laptop_template/mkbatch.no_batch_system
M       cime_config/cesm/machines/config_compilers.xml
M       cime_config/cesm/machines/config_machines.xml
D       cime_config/cesm/machines/taskmaker.pl
D       cime_config/cesm/machines/userdefined_laptop_template/mkbatch.no_batch_system
M       driver_cpl/bld/build-namelist
M       driver_cpl/bld/testdir/env_build.xml
M       driver_cpl/bld/testdir/env_case.xml
M       driver_cpl/bld/testdir/env_mach_pes.xml
M       driver_cpl/bld/testdir/env_run.xml
M       driver_cpl/cime_config/buildnml
M       scripts/Testing/Testcases/config_tests.xml
M       scripts/Tools/bless_test_results
M       scripts/Tools/case.build
M       scripts/Tools/case.submit
M       scripts/Tools/code_checker
M       scripts/Tools/compare_namelists
M       scripts/Tools/component_compgen_baseline.sh
M       scripts/Tools/cs_status
M       scripts/Tools/jenkins_generic_job
M       scripts/Tools/simple_compare
M       scripts/Tools/standard_script_setup.py
A       scripts/Tools/taskmaker
M       scripts/Tools/wait_for_tests
M       scripts/create_newcase
M       scripts/create_test
M       utils/python/CIME/SystemTests/eri.py
M       utils/python/CIME/SystemTests/erp.py
M       utils/python/CIME/SystemTests/err.py
M       utils/python/CIME/SystemTests/ers.py
M       utils/python/CIME/SystemTests/ert.py
M       utils/python/CIME/SystemTests/icp.py
M       utils/python/CIME/SystemTests/lii.py
M       utils/python/CIME/SystemTests/nck.py
M       utils/python/CIME/SystemTests/ncr.py
M       utils/python/CIME/SystemTests/pea.py
M       utils/python/CIME/SystemTests/pem.py
M       utils/python/CIME/SystemTests/pet.py
M       utils/python/CIME/SystemTests/pfs.py
M       utils/python/CIME/SystemTests/seq.py
M       utils/python/CIME/SystemTests/sms.py
M       utils/python/CIME/SystemTests/ssp.py
M       utils/python/CIME/SystemTests/system_tests_common.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/XML/env_mach_specific.py
M       utils/python/CIME/XML/generic_xml.py
A       utils/python/CIME/bless_test_results.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case.py
M       utils/python/CIME/case_setup.py
M       utils/python/CIME/case_st_archive.py
M       utils/python/CIME/case_test.py
M       utils/python/CIME/check_input_data.py
A       utils/python/CIME/compare_namelists.py
A       utils/python/CIME/simple_compare.py
M       utils/python/CIME/task_maker.py
M       utils/python/CIME/test_scheduler.py
A       utils/python/CIME/test_status.py
M       utils/python/CIME/user_mod_support.py
M       utils/python/CIME/utils.py
A       utils/python/CIME/wait_for_tests.py
D       utils/python/compare_namelists.py
A       utils/python/jenkins_generic_job.py
D       utils/python/simple_compare.py
M       utils/python/tests/scripts_regression_tests.py
D       utils/python/wait_for_tests.py

======================================================================

======================================================================

Originator: Bill Sacks
Date: Aug 02, 2016
Tag: cime5.0.5
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:  None (removes dependency of cime5.0.4 on clm branch)

Description:
- move LII test from CLM back to CIME (until new API is solidified)

Modified files:
utils/python/CIME/SystemTests/lii.py

======================================================================

Originator: Jim Edwards
Date: Aug 01, 2016
Tag: cime5.0.4
Answer Changes: None
Tests: scripts_regression_tests
Dependencies: Needs clm branch containing LII test

Description:

- Updates of hobart machine
- Put provenance back in README -
- Update TestStatus to run tests multiple times in a case - Fix for
- Add README files back to test directories
- Dynamically search for system tests, move LII test to CLM cime_config
- Add python profiling tool
- Minor bug fixes in prep_ocn_mod and prep_wav_mod  pointed out by CRAY compiler

Modified files:

cime_config/acme/config_files.xml
cime_config/cesm/config_files.xml
cime_config/cesm/machines/config_batch.xml
cime_config/cesm/machines/config_compilers.xml
cime_config/cesm/machines/config_machines.xml
driver_cpl/driver/prep_ocn_mod.F90
driver_cpl/driver/prep_wav_mod.F90
scripts/Testing/Testcases/README
scripts/Tools/advanced-py-prof
scripts/Tools/bless_test_results
scripts/Tools/case.build
scripts/Tools/simple-py-prof
scripts/create_test
utils/python/CIME/SystemTests/README
utils/python/CIME/SystemTests/lii.py
utils/python/CIME/SystemTests/system_tests_common.py
utils/python/CIME/XML/env_test.py
utils/python/CIME/case.py
utils/python/CIME/case_test.py
utils/python/CIME/check_input_data.py
utils/python/CIME/system_test.py
utils/python/CIME/test_scheduler.py
utils/python/CIME/test_utils.py
utils/python/CIME/user_mod_support.py
utils/python/CIME/utils.py
utils/python/cs.submit.template
utils/python/tests/scripts_regression_tests.py



====================================================================

Originator: Jim Edwards
Date: July 26, 2016
Tag: cime5.0.3
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:

Brief Summary:
- fixes as a result of cesm2_alpha01b testing
- print output from buildnml
- improve mismatch argument to NAG compiler
- fix memleak error if baseline not found
- add support to create_test for ascii testfile
- move pecount support from create_test to create_newcase
- fix LII test, fix ERP test
- reintroduce --verbose option

User interface changes: none

Modified files: git diff --name-status
M       ChangeLog
M       cime_config/acme/config_files.xml
M       cime_config/cesm/machines/Makefile
M       cime_config/cesm/machines/config_compilers.xml
A       cime_config/cesm/machines/nag_mpi_argument.txt
M       driver_cpl/cime_config/buildexe
M       scripts/Tools/case.build
M       scripts/Tools/code_checker
M       scripts/Tools/component_compare_test.sh
M       scripts/Tools/preview_namelists
M       scripts/create_newcase
M       scripts/create_test
M       utils/python/CIME/SystemTests/erp.py
M       utils/python/CIME/SystemTests/lii.py
M       utils/python/CIME/SystemTests/system_tests_common.py
M       utils/python/CIME/XML/env_batch.py
M       utils/python/CIME/build.py
M       utils/python/CIME/case.py
M       utils/python/CIME/preview_namelists.py
M       utils/python/CIME/system_test.py
M       utils/python/CIME/utils.py
M       utils/python/tests/scripts_regression_tests.py
M       utils/python/update_acme_tests.py

======================================================================

Originator: Jim Edwards
Date: July 22, 2016
Tag: cime5.0.2
Answer Changes: None
Tests:
Dependencies:

Brief Summary: further fixes as a result of cesm2_alpha01 testing

User interface changes:

Modified files: git diff --name-status
	d518834 minor change for hobart only
	605e942 Merge pull request #283 from ESMCI/mira_walltime_fix
	5ef8068 Merge pull request #284 from mvertens/newtests
	462810e replaced ww3 with stub wave in several tests that are known to fail
	a8b9e7c need to return default walltime

======================================================================

======================================================================

Originator: Jim Edwards
Date: July 22, 2016
Tag: cime5.0.1
Answer Changes: None
Tests: cesm prealpha, prebeta, aux_*
Dependencies:

Brief Summary: fixes as a result of cesm2_alpha01 testing

User interface changes:

Modified files: git diff --name-status
49e3c29 (HEAD, tag: cime5.0.1) Minor fix
	11d61ce Merge pull request #279 from ESMCI/jgfouca/cime_bisect
	b15cf46 Upgrade cime_bisect
	873856a Merge pull request #278 from jedwards4b/minor_fixes_for_cesm_port
	b990f48 add code to cp testreporter script for cesm
	6ad54e9 Merge pull request #277 from fischer-ncar/testreporter_fix
	be6d1b3 both compare and generate baseline_action_codes are allowed
	e76ddc1 Fix for testreporter on hobart.
	49fb888 fix issue with _caseroot when cloning
	6d29a93 Update testreporter to work with updated ESMCI CIME
	b7ed88f Updating to current ESMCI cime master
	dbf9a47 Merge pull request #276 from ESMCI/jayeshkrishna/get_mira_working_for_ac
	me
	b5a2ce0 Get Mira working with acme
	7adda2e updates for cesm allactive tests and compsets
======================================================================

======================================================================

Originator: Jim Edwards
Date: July 20th 2016
Tag: cime5.0.0
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:

Brief Summary: Scripts reimplemented in python

User interface changes: Lots of new options, options that are
	no longer there.

Modified files: too numerous to mention, please see the git log
======================================================================

Originator: mvertens
Date: July 9, 2016
Tag: cime4.5.23
Answer Changes: None
Tests: Ran prealph intel tests and compared to cesm1_5_alpha07e
Dependencies: None

Brief Summary:  Removed all code related to using the ESMF interfaces

Modified files: git diff --name-status

M       cime_config/cesm/config_grids.xml
M       driver_cpl/cime_config/config_component.xml
M       driver_cpl/driver/cesm_comp_mod.F90
M       driver_cpl/driver/cesm_driver.F90
M       driver_cpl/driver/component_mod.F90
M       driver_cpl/driver/component_type_mod.F90
M       driver_cpl/driver/seq_diag_mct.F90
M       driver_cpl/driver/seq_map_mod.F90
M       driver_cpl/driver/seq_map_type_mod.F90
M       driver_cpl/shr/seq_comm_mct.F90

Deleted files:

D       driver_cpl/driver/cpl_comp_esmf.F90
D       driver_cpl/driver/seq_map_esmf.F90
D       driver_cpl/shr_esmf/esmf2mct_mod.F90
D       driver_cpl/shr_esmf/esmfshr_attribute_mod.F90
D       driver_cpl/shr_esmf/esmfshr_infodata_mod.F90
D       driver_cpl/shr_esmf/esmfshr_mod.F90
D       driver_cpl/shr_esmf/esmfshr_util_mod.F90
D       driver_cpl/shr_esmf/mct2esmf_mod.F90
======================================================================

Originator: fischer-ncar
Date: July 7, 2016
Tag: cime4.5.22
Answer Changes: None
Tests:
Dependencies:

Brief Summary:  Fix broken compset names

User interface changes:

Modified files: git diff --name-status

M       cime_config/cesm/allactive/config_compsets.xml
M       cime_config/cesm/allactive/testlist_allactive.xml

======================================================================

Originator: cacraigucar, fischer-ncar
Date: July 7, 2016
Tag: cime4.5.21
Answer Changes: Possible answer changes only on corip1
Tests: Ran with CAM tag geotrace3_cac_n59_cam5_4_57
Dependencies: None

Brief Summary:
   Incorporating water isotopes
   Update modules for corip1

User interface changes: none

Modified files: git diff --name-status
M       ChangeLog
M       cime_config/cesm/allactive/config_compsets.xml
M       cime_config/cesm/allactive/config_pes.xml
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/machines/config_machines.xml
M       driver_cpl/bld/build-namelist
M       driver_cpl/bld/namelist_files/namelist_definition_drv.xml
M       driver_cpl/cime_config/config_component.xml
A       driver_cpl/driver/mrg_mod.F90
M       driver_cpl/driver/prep_ice_mod.F90
M       driver_cpl/driver/prep_ocn_mod.F90
M       driver_cpl/driver/prep_rof_mod.F90
M       driver_cpl/driver/seq_diag_mct.F90
M       driver_cpl/driver/seq_flux_mct.F90
M       driver_cpl/shr/seq_flds_mod.F90
M       share/csm_share/shr/shr_const_mod.F90
M       share/csm_share/shr/shr_flux_mod.F90
A       share/csm_share/shr/water_isotopes.F90
A       share/csm_share/shr/water_types.F90

======================================================================

Originator: fischer-ncar, Brain Kauffman
Date: 6 July 2016
Tag: cime4.5.20
Answer Changes: None
Tests:
Dependencies:

Brief Summary: Updates to config_files.xml and config_grids.xml to support mpas-o

User interface changes:

Modified files: git diff --name-status
M       cime_config/cesm/config_files.xml
M       cime_config/cesm/config_grids.xml

======================================================================

Originator: apcraig
Date: 6 July 2016
Tag: cime4.5.19
Answer Changes: None
Tests:
Dependencies:

Brief Summary: Addition of ice to ocean coupling fields Fioi_bcphi,
	       Fioi_bcpho, Fioi_flxdst

User interface changes:

Modified files: git diff --name-status
M       driver_cpl/shr/seq_flds_mod.F90

======================================================================

Originator: fischer-ncar, jtruesdal
Date: 6 July 2016
Tag: cime4.5.18
Answer Changes: Answer changes for compset with WaveWatch turned on.
		All others are bit-for-bit.
Tests: Namelist test ran on yellowstone, WAV_GRID manually looked at.
Dependencies:

Brief Summary: Add support to run WaveWatch.  Allactive
	       compset not being tested were removed.

User interface changes:

Modified files: git diff --name-status
M       cime_config/cesm/allactive/config_compsets.xml
M       cime_config/cesm/allactive/config_pes.xml
M       cime_config/cesm/allactive/testlist_allactive.xml
M       cime_config/cesm/config_grids.xml

======================================================================

Originator: fischer-ncar
Date: 21 June 2016
Tag: cime4.5.17
Answer Changes: None
Tests:
Dependencies: None

Brief Summary:
   PR # 457: Remove ESMF tests and create ChangeLog and ChangeLog_template

User interface changes: none

Modified files: git diff --name-status
A       ChangeLog
A       ChangeLog_template
M       cime_config/cesm/allactive/testlist_allactive.xml
M       driver_cpl/cime_config/testdefs/testlist_drv.xml

======================================================================

Originator:
Date:
Tag: cimeX.Y.Z
Answer Changes: [None, Round Off, Climate Changing]
Tests:
Dependencies:

Brief Summary:

User interface changes:

Modified files: git diff --name-status

======================================================================
