#! /bin/csh # # Job script to run "tgcmproc" on IBM system. # #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # To submit: # 1. Set env vars below (JOB,EXEC,OUTPUT,REMOTE,POSTCLEAN) # (REMOTE might be the only one you have to change) # 2. Include namelist input file (see "$input" below) # 3. Optionally change path to source and Makefile (see INCLUDEs below) # 4. Set class (queue) for loadleveler (see "# @ class" below) # (optionally set other loadleveler commands for IBM job) # 5. Use the "submit" command (/home/tgcm/bld/submit) to submit the job. # # JOB : Job name (will be used in tmpdir name, input file name, etc) # EXEC : Name of executable built by make (see Makefile). # OUTPUT: File name of stdout output file. # REMOTE: Machine:path directory where OUTPUT is to be sent via rcp. # (typically on the local workstation from which this script was submitted) # POSTCLEAN: Set to 1 to remove execution directory after job completion, # or set to 0 to save execution directory. # setenv JOB tgcmproc setenv EXEC tgcmproc_f90 setenv REMOTE vishnu.hao:/home/foster/ntwk setenv OUTPUT $JOB.$$ setenv POSTCLEAN 0 #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # # Determine operating system (AIX is only OS for this script): # setenv HOST `uname -n` set os = `uname -s` if ($os =~ *'AIX'*) then set os = AIX else echo " " echo ">>> Unknown OS: uname -s = $os" echo "Job $JOB NOT submitted." exit endif setenv OS $os # # Set up a tmpdir and go there: # #set tmpdir = /ptmp/$user/$JOB.$$ set tmpdir = /ptmp/$user/nozawa #set tmpdir = /hao/$user/$JOB.$$ if (! -e $tmpdir) then echo "Making tmpdir $tmpdir" set err = 0 mkdir -p $tmpdir || set err = 1 if ($err == 1) then echo " " echo "WARNING Error making tmpdir $tmpdir." echo "Job $JOB NOT submitted." echo " " endif else echo "NOTE: tmpdir $tmpdir already exists." endif setenv EXECDIR $tmpdir cd $EXECDIR echo "Moved to submit dir $EXECDIR" # # Init output file: # touch $OUTPUT # echo " " echo "JOB = $JOB" echo "OS = $os" echo "HOST = $HOST" echo "EXECDIR = $EXECDIR" echo "DATE = `date`" # echo " " >> $OUTPUT echo "JOB = $JOB" >> $OUTPUT echo "OS = $os" >> $OUTPUT echo "HOST = $HOST" >> $OUTPUT echo "EXECDIR = $EXECDIR" >> $OUTPUT echo "POSTCLEAN = $POSTCLEAN" >> $OUTPUT echo "DATE = `date`" >> $OUTPUT echo " " >> $OUTPUT # # Make loadleveler command file: # #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cat << 'EOF_LL' >! loadlev.job # # Loadleveler job step to build and execute: # # Example: With total_tasks=32, node=8, and DYNAMO=2, a 1-day run at # STEP=180 (480 iters) takes about 9 mins wallclock, NOT including # mss access, and without secondary histories. # # # @ job_name = tgcmproc ## @ account_no = 28103032 # @ step_name = exec ## @ class = share # @ class = dv_reg # @ wall_clock_limit = 03:00:00 # @ environment = COPY_ALL # @ requirements = (Machine == "$(hostname)") # @ executable = $(step_name).csh # @ notification = error # @ queue # # Loadleveler job step for cleanup: # # @ step_name = cleanup # @ class = interactive # @ wall_clock_limit = 00:00:30 # @ job_type = serial # @ executable = $(step_name).csh # @ notification = complete # @ requirements = (Machine == "$(hostname)") # @ dependency = (exec == 0) || (exec != 0) # @ queue # 'EOF_LL' #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # # Build make and exec script: # cat << 'EXEC_STEP' >! exec.csh #! /bin/csh # # Shell script for loadleveler execution step: # Build and execute tgcmproc. # cd $EXECDIR echo " " echo "Host = $HOST" echo "OS = $OS" echo "Current working directory = $EXECDIR" echo " " # # Get executable from mss and set permissions: # Temporary: commented out msrcp in order to use local ./tgcmproc_f90. # #set mss_exec = /TGCM/tgcmproc/tgcmproc_aix #set err = 0 #msrcp mss:${mss_exec} $EXEC || set err = 1 #if ($err == 0) then # echo "Acquired $mss_exec from NCAR mss" >> $OUTPUT #else # echo ">>> Error acquiring $mss_exec from NCAR mss: err=$err" >> $OUTPUT # echo "Command used: msrcp mss:${mss_exec} $EXEC" >> $OUTPUT # exit #endif #chmod u+x $EXEC # # Include user's input file: # set input = $JOB.inp cat << 'EOFINP' >! $input INCLUDE proc.sta.nozawa.inp 'EOFINP' # # Execute: # set err = 0 timex $EXEC < $JOB.inp >>& $OUTPUT || set err = 1 if ($err == 0) then echo "Completed execution of $EXEC." >> $OUTPUT else echo ">>> Error executing $EXEC." >> $OUTPUT endif 'EXEC_STEP' chmod u+x exec.csh #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # # Build cleanup script: # cat << 'EOF_CLEANUP' >! cleanup.csh #! /bin/csh # # Remote copy output and remove submitdir. # echo " " >> $OUTPUT echo "Execution directory submitdir = $EXECDIR" >> $OUTPUT ls -l $OUTPUT >> $OUTPUT echo "Preparing to rcp output $OUTPUT from submitdir to remote $REMOTE" >> $OUTPUT if ($POSTCLEAN == 1) then echo "NOTE: submitdir and its contents will be removed after the rcp" endif # set err = 0 rcp $OUTPUT $REMOTE >>& $OUTPUT || set err = 1 #/usr/bsd/rcp $OUTPUT $REMOTE || set err = 1 if ($err != 0) then echo " " >> $OUTPUT echo ">>> WARNING: error from rcp of output $OUTPUT to $REMOTE" >> $OUTPUT echo " Will save $OUTPUT to /home/$user" cp $OUTPUT /home/$user || \ echo ">>> WARNING: error copying $OUTPUT to /home/$user" endif # # Clean submit directory: # if ($POSTCLEAN == 1) then cd rm -r $EXECDIR endif exit 'EOF_CLEANUP' chmod u+x cleanup.csh #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # # Submit the job: # llsubmit loadlev.job